Variant report

Variant	rs36171
Chromosome Location	chr3:134651853-134651854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs185257	0.89[EUR][1000 genomes]
rs187587	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36160	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36161	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36170	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36172	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36176	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36177	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36178	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36179	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36180	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36181	0.95[EUR][1000 genomes]
rs36182	0.95[EUR][1000 genomes]
rs36183	0.94[EUR][1000 genomes]
rs36184	0.94[EUR][1000 genomes]
rs36185	0.94[EUR][1000 genomes]
rs36186	0.93[EUR][1000 genomes]
rs39701	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs39702	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs39703	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs39704	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs40157	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs40437	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs40438	0.97[ASN][1000 genomes]
rs42883	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs43208	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4955528	0.87[EUR][1000 genomes]
rs504033	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs680054	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs975149	0.90[EUR][1000 genomes]
rs9819131	0.91[EUR][1000 genomes]
rs9856814	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134639400-134653800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:134642400-134653800	Weak transcription	Brain Germinal Matrix	brain
3	chr3:134644200-134654800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:134644600-134656400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:134649000-134656200	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:134649000-134656200	Weak transcription	Fetal Stomach	stomach
7	chr3:134649200-134652400	Enhancers	Colon Smooth Muscle	Colon
8	chr3:134649800-134653400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:134650200-134653200	Weak transcription	Brain Anterior Caudate	brain
10	chr3:134650400-134656000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:134650600-134652400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:134650600-134652600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:134650600-134653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:134650600-134655600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr3:134650600-134655600	Weak transcription	GM12878-XiMat	blood
16	chr3:134650600-134660600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:134651200-134655800	Weak transcription	Fetal Brain Male	brain
18	chr3:134651400-134653200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:134651800-134652000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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