Variant report

Variant	rs67700829
Chromosome Location	chr11:71279600-71279601
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr11:71279254-71280325	MCF-7	breast:	n/a	n/a
2	FOXA2	chr11:71279461-71279796	A549	lung:	n/a	n/a
3	HDAC2	chr11:71279493-71279890	MCF-7	breast:	n/a	n/a
4	GATA3	chr11:71279557-71279726	MCF-7	breast:	n/a	n/a
5	FOXA1	chr11:71279488-71279909	HepG2	liver:	n/a	n/a
6	ZNF217	chr11:71279578-71280185	MCF-7	breast:	n/a	n/a
7	GATA3	chr11:71279405-71280187	MCF-7	breast:	n/a	chr11:71279443-71279453
8	GATA2	chr11:71279383-71280187	SH-SY5Y	brain:	n/a	chr11:71279443-71279453
9	NR2F2	chr11:71279489-71279934	MCF-7	breast:	n/a	n/a
10	EP300	chr11:71279462-71279902	MCF-7	breast:	n/a	n/a
11	GATA3	chr11:71279409-71280124	SH-SY5Y	brain:	n/a	chr11:71279443-71279453
12	FOXA1	chr11:71279506-71279753	HepG2	liver:	n/a	n/a
13	NR2F2	chr11:71279502-71279791	MCF-7	breast:	n/a	n/a
14	GATA3	chr11:71279246-71280070	MCF-7	breast:	n/a	chr11:71279443-71279453
15	FOXA2	chr11:71279486-71279724	HepG2	liver:	n/a	n/a
16	GATA3	chr11:71279459-71280166	MCF-7	breast:	n/a	n/a
17	CTCF	chr11:71279520-71279670	NHEK	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71279425..71280036-chr11:71290519..71291383,2	MCF-7	breast:
2	chr11:71278628..71280477-chr11:71289049..71291000,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248903	TF binding region
ENSG00000249387	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv468632	chr11:71200320-71289089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv555402	chr11:71200320-71289089	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv825988	chr11:71277262-71294289	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv975200	chr11:71277624-71280675	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv975851	chr11:71278888-71295301	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv1224135	chr11:71279599-71279600	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71277200-71280400	Enhancers	Adipose Nuclei	Adipose
2	chr11:71277400-71279800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:71277600-71279800	Weak transcription	Left Ventricle	heart
4	chr11:71277600-71280400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:71277600-71281600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:71277600-71282800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:71277600-71290400	Weak transcription	Right Atrium	heart
8	chr11:71278000-71279800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:71278200-71281600	Weak transcription	Spleen	Spleen
10	chr11:71278400-71279800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:71278800-71279600	Bivalent Enhancer	HepG2	liver
12	chr11:71279000-71280200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:71279000-71280600	Enhancers	Fetal Muscle Leg	muscle
14	chr11:71279000-71281200	Enhancers	Fetal Stomach	stomach
15	chr11:71279200-71279600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:71279200-71280400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:71279400-71280000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:71279400-71281400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:71279600-71280200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr11:71279600-71280200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr11:71279600-71280200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:71279600-71280200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:71279600-71280200	Enhancers	Psoas Muscle	Psoas
24	chr11:71279600-71280200	Enhancers	Stomach Smooth Muscle	stomach
25	chr11:71279600-71280200	Flanking Bivalent TSS/Enh	HepG2	liver
26	chr11:71279600-71280400	Enhancers	Fetal Lung	lung
27	chr11:71279600-71282000	Enhancers	Skeletal Muscle Female	skeletal muscle

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