Variant report

Variant	rs6770105
Chromosome Location	chr3:113377701-113377702
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113376926..113378979-chr3:113379670..113382316,2	MCF-7	breast:
2	chr3:113369077..113371328-chr3:113377599..113380193,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6805450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954607	1.00[AMR][1000 genomes]
rs72954609	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113366800-113378800	Weak transcription	Gastric	stomach
2	chr3:113368000-113383400	Weak transcription	Colonic Mucosa	Colon
3	chr3:113370400-113378000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:113371200-113379400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:113371600-113382400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:113371800-113386800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:113372400-113378200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:113372400-113378600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:113373200-113377800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:113373200-113378200	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:113373200-113383800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:113373200-113386800	Weak transcription	HUVEC	blood vessel
13	chr3:113373400-113378000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:113373400-113384600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr3:113373600-113378600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:113373600-113379200	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr3:113373600-113380000	Strong transcription	Fetal Brain Female	brain
18	chr3:113373600-113380200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:113373600-113380200	Strong transcription	Fetal Lung	lung
20	chr3:113373600-113381800	Weak transcription	Small Intestine	intestine
21	chr3:113373600-113382600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:113373600-113384600	Strong transcription	Primary T cells from cord blood	blood
23	chr3:113373800-113377800	Enhancers	Primary B cells from cord blood	blood
24	chr3:113373800-113378000	Weak transcription	Right Ventricle	heart
25	chr3:113373800-113378200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:113373800-113378400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:113373800-113378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:113373800-113380000	Genic enhancers	Fetal Muscle Leg	muscle
29	chr3:113373800-113384000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr3:113373800-113384600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:113373800-113386200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:113374000-113381600	Weak transcription	Stomach Mucosa	stomach
33	chr3:113374000-113386800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr3:113374200-113378000	Weak transcription	Colon Smooth Muscle	Colon
35	chr3:113374200-113378200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:113374200-113378800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr3:113374200-113380000	Strong transcription	Fetal Stomach	stomach
38	chr3:113374200-113384200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:113374400-113378200	Strong transcription	Thymus	Thymus
40	chr3:113374400-113379600	Weak transcription	Fetal Heart	heart
41	chr3:113374400-113380000	Strong transcription	Fetal Kidney	kidney
42	chr3:113374400-113380200	Strong transcription	Fetal Muscle Trunk	muscle
43	chr3:113374400-113380200	Strong transcription	GM12878-XiMat	blood
44	chr3:113374400-113384200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:113374600-113377800	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr3:113374600-113379200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:113374600-113379200	Strong transcription	HSMM	muscle
48	chr3:113374600-113380000	Strong transcription	Brain Germinal Matrix	brain
49	chr3:113374600-113380200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:113374600-113382000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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