Variant report

Variant	rs6805450
Chromosome Location	chr3:113391017-113391018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113389553..113392431-chr3:113412676..113415547,2	K562	blood:
2	chr3:113390470..113392373-chr3:113392911..113395548,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176542	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6770105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954607	1.00[AMR][1000 genomes]
rs72954609	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113376600-113404800	Weak transcription	Hela-S3	cervix
2	chr3:113379000-113403400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:113379600-113391200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:113379600-113391400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:113379600-113394200	Weak transcription	NHEK	skin
6	chr3:113379600-113404800	Weak transcription	Right Ventricle	heart
7	chr3:113379800-113394200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:113380000-113391800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:113380000-113392600	Weak transcription	Placenta	Placenta
10	chr3:113380000-113393000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:113380000-113395000	Weak transcription	Brain Anterior Caudate	brain
12	chr3:113380000-113395000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:113380000-113395200	Weak transcription	Lung	lung
14	chr3:113380000-113395400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:113380000-113395400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:113380000-113395600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:113380000-113395800	Weak transcription	Fetal Brain Male	brain
18	chr3:113380000-113395800	Weak transcription	Fetal Brain Female	brain
19	chr3:113380000-113396000	Weak transcription	Brain Substantia Nigra	brain
20	chr3:113380000-113396200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:113380000-113413800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:113380000-113414000	Weak transcription	NH-A	brain
23	chr3:113380200-113391800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:113380200-113393200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:113380200-113395600	Weak transcription	Fetal Heart	heart
26	chr3:113380200-113404600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:113380800-113413400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr3:113381000-113404000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:113381400-113394800	Weak transcription	Brain Angular Gyrus	brain
30	chr3:113381400-113404000	Weak transcription	Spleen	Spleen
31	chr3:113381600-113392400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr3:113381800-113395000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:113382400-113392400	Weak transcription	Fetal Lung	lung
34	chr3:113382400-113395000	Weak transcription	Esophagus	oesophagus
35	chr3:113382600-113391200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:113382600-113391400	Weak transcription	Colon Smooth Muscle	Colon
37	chr3:113382800-113396400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:113383800-113392800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr3:113384200-113391600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr3:113384200-113392000	Weak transcription	Brain Germinal Matrix	brain
41	chr3:113384200-113392400	Weak transcription	Pancreas	Pancrea
42	chr3:113384200-113404000	Weak transcription	Aorta	Aorta
43	chr3:113384200-113404600	Weak transcription	Gastric	stomach
44	chr3:113384200-113404600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr3:113384200-113413600	Weak transcription	Colonic Mucosa	Colon
46	chr3:113384600-113392400	Weak transcription	Ovary	ovary
47	chr3:113384600-113393400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr3:113384600-113394600	Weak transcription	Left Ventricle	heart
49	chr3:113384600-113395400	Weak transcription	HepG2	liver
50	chr3:113384800-113391400	Weak transcription	Liver	Liver

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