Variant report

Variant	rs6771329
Chromosome Location	chr3:42768944-42768945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3732861	1.00[ASW][hapmap]
rs6773675	0.87[MKK][hapmap]
rs6777653	0.87[MKK][hapmap]
rs6794170	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6794309	1.00[AMR][1000 genomes]
rs6802779	0.87[MKK][hapmap]
rs6810329	1.00[ASW][hapmap];0.87[MKK][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42760400-42769600	Weak transcription	Right Atrium	heart
2	chr3:42760400-42773600	Enhancers	Brain Substantia Nigra	brain
3	chr3:42763600-42773600	Enhancers	Brain Anterior Caudate	brain
4	chr3:42763600-42774800	Enhancers	Brain Angular Gyrus	brain
5	chr3:42763800-42771400	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:42764000-42771000	Weak transcription	Psoas Muscle	Psoas
7	chr3:42765000-42769000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:42765000-42771000	Weak transcription	Right Ventricle	heart
9	chr3:42765000-42772600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:42765200-42770800	Weak transcription	Fetal Heart	heart
11	chr3:42767600-42772600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:42767800-42774400	Enhancers	Brain Cingulate Gyrus	brain
13	chr3:42768000-42769000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:42768000-42769000	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:42768000-42769000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:42768000-42769000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:42768600-42776000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr3:42768800-42769600	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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