Variant report

Variant	rs6794170
Chromosome Location	chr3:42758668-42758669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6768001	0.83[AFR][1000 genomes]
rs6771329	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6773675	0.83[AFR][1000 genomes]
rs6777653	0.83[AFR][1000 genomes]
rs6781327	0.83[AFR][1000 genomes]
rs6783035	0.83[AFR][1000 genomes]
rs6792887	0.83[AFR][1000 genomes]
rs6794309	1.00[AMR][1000 genomes]
rs6802779	0.83[AFR][1000 genomes]
rs6810329	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42747800-42760200	Weak transcription	Right Atrium	heart
2	chr3:42754400-42760600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:42754800-42760200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:42758400-42759200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:42758400-42762000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:42758600-42759800	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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