The 2.0 version of rSNPBase

Variant report

Variant rs6771472
Chromosome Location chr3:24269076-24269077
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:24251400-24279200 Weak transcription Rectal Mucosa Donor 29 rectum
2 chr3:24252400-24276400 Weak transcription HepG2 liver
3 chr3:24257400-24274000 Weak transcription Pancreas Pancrea
4 chr3:24262200-24283200 Weak transcription Fetal Stomach stomach
5 chr3:24262600-24283200 Weak transcription Left Ventricle heart
6 chr3:24263000-24283000 Weak transcription Brain Cingulate Gyrus brain
7 chr3:24263200-24273800 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr3:24264000-24275400 Weak transcription Psoas Muscle Psoas
9 chr3:24264600-24270600 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr3:24264600-24276800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr3:24264800-24271000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr3:24264800-24276400 Weak transcription Placenta Amnion Placenta Amnion
13 chr3:24266000-24273600 Weak transcription Gastric stomach
14 chr3:24267000-24271200 Weak transcription Aorta Aorta
15 chr3:24267000-24279000 Weak transcription Brain Angular Gyrus brain
16 chr3:24267000-24283000 Weak transcription Brain Inferior Temporal Lobe brain
17 chr3:24267000-24283800 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr3:24267200-24274200 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr3:24267200-24274600 Weak transcription Esophagus oesophagus
20 chr3:24267200-24276400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr3:24267400-24276400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr3:24267400-24278600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr3:24268000-24271400 Strong transcription Fetal Intestine Small intestine
24 chr3:24268000-24272400 Strong transcription Fetal Intestine Large intestine
25 chr3:24268200-24274000 Weak transcription Colon Smooth Muscle Colon
26 chr3:24268200-24274000 Weak transcription Stomach Smooth Muscle stomach
27 chr3:24268200-24278400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr3:24268200-24291000 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr3:24268400-24273200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr3:24268600-24269200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr3:24268600-24269800 Strong transcription Adipose Nuclei Adipose
32 chr3:24268600-24269800 Strong transcription Liver Liver
33 chr3:24268800-24269200 Strong transcription Rectal Smooth Muscle rectum
34 chr3:24268800-24269400 Strong transcription Lung lung
35 chr3:24268800-24269400 Strong transcription Rectal Mucosa Donor 31 rectum
36 chr3:24268800-24270000 Strong transcription Breast Myoepithelial Primary Cells Breast
37 chr3:24268800-24279400 Weak transcription Fetal Lung lung
38 chr3:24269000-24276400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015