Variant report

Variant	rs6771916
Chromosome Location	chr3:141035122-141035123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17787621	1.00[ASN][1000 genomes]
rs1983235	0.85[AMR][1000 genomes]
rs4132036	1.00[ASN][1000 genomes]
rs56054141	1.00[ASN][1000 genomes]
rs59539710	0.88[AMR][1000 genomes]
rs6765857	0.85[AMR][1000 genomes]
rs6777886	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6795197	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6795377	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7636469	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9843461	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141031600-141039800	Weak transcription	NHDF-Ad	bronchial
2	chr3:141031800-141035800	Weak transcription	Brain Angular Gyrus	brain
3	chr3:141031800-141039200	Weak transcription	Primary T cells from cord blood	blood
4	chr3:141031800-141039800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:141031800-141047400	Weak transcription	Right Ventricle	heart
6	chr3:141032200-141039800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:141032600-141039600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:141033800-141035800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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