Variant report

Variant	rs9843461
Chromosome Location	chr3:141040304-141040305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr3:141039852-141040383	HCT-116	colon:	n/a	n/a
2	JUND	chr3:141039832-141040425	HCT-116	colon:	n/a	n/a
3	FOS	chr3:141039720-141040376	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141038218..141041053-chr3:141044225..141046935,2	K562	blood:
2	chr3:141039246..141041053-chr3:141044683..141046935,2	K562	blood:

Variant related genes	Relation type
ZBTB38	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1511380	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs17787621	1.00[ASN][1000 genomes]
rs1983235	0.96[CEU][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4132036	1.00[ASN][1000 genomes]
rs4325905	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs56054141	1.00[ASN][1000 genomes]
rs59539710	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6765857	0.96[CEU][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6771916	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6777886	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795197	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795377	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616781	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs7636469	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829470	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141031800-141047400	Weak transcription	Right Ventricle	heart
2	chr3:141039000-141041000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:141039000-141041200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr3:141039000-141041400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:141039200-141040400	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:141039200-141040800	Enhancers	Primary T cells from cord blood	blood
7	chr3:141039200-141041000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr3:141039200-141041000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:141039200-141041000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:141039200-141041200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:141039400-141040800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:141039400-141040800	Enhancers	HUVEC	blood vessel
13	chr3:141039600-141040400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr3:141039600-141040400	Enhancers	NH-A	brain
15	chr3:141039600-141040600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:141039600-141040600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:141039600-141040600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:141039600-141040600	Enhancers	Hela-S3	cervix
19	chr3:141039600-141040600	Enhancers	HMEC	breast
20	chr3:141039600-141041400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:141039600-141042800	Enhancers	Fetal Intestine Large	intestine
22	chr3:141039800-141040400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:141039800-141040600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:141039800-141040600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:141039800-141040600	Enhancers	HSMM	muscle
26	chr3:141039800-141040600	Enhancers	NHDF-Ad	bronchial
27	chr3:141039800-141042000	Weak transcription	HepG2	liver
28	chr3:141039800-141042800	Enhancers	Fetal Intestine Small	intestine
29	chr3:141040000-141040400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:141040000-141040400	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr3:141040000-141040400	Flanking Active TSS	A549	lung
32	chr3:141040000-141040400	Enhancers	GM12878-XiMat	blood
33	chr3:141040000-141040400	Enhancers	NHEK	skin
34	chr3:141040000-141040600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:141040000-141040600	Enhancers	HSMMtube	muscle
36	chr3:141040000-141040600	Enhancers	NHLF	lung
37	chr3:141040000-141040600	Enhancers	Osteobl	bone
38	chr3:141040000-141041000	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr3:141040000-141041200	Enhancers	Small Intestine	intestine
40	chr3:141040000-141041400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr3:141040000-141042800	Weak transcription	K562	blood
42	chr3:141040200-141040600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:141040200-141041000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:141040200-141041400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr3:141040200-141042000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:141040200-141042400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:141040200-141044000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:141040200-141044600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:141040200-141045200	Weak transcription	Lung	lung

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