Variant report

Variant	rs6773511
Chromosome Location	chr3:135743572-135743573
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135683335..135686243-chr3:135740274..135744209,4	MCF-7	breast:
2	chr3:135683605..135685753-chr3:135743032..135744749,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073711	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10512973	0.84[YRI][hapmap]
rs16843557	1.00[AMR][1000 genomes]
rs16843653	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6769336	0.96[AFR][1000 genomes]
rs6772597	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6783238	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6807844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135717200-135747000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:135718000-135753000	Weak transcription	Fetal Kidney	kidney
3	chr3:135719200-135746200	Weak transcription	Fetal Intestine Large	intestine
4	chr3:135721800-135763600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:135726200-135748000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:135726400-135758400	Weak transcription	Lung	lung
7	chr3:135727200-135746600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:135727400-135760600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:135727800-135769400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:135728000-135748000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:135728200-135746400	Weak transcription	Ovary	ovary
12	chr3:135735800-135760600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:135737400-135747200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr3:135738000-135745800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:135738000-135750000	Weak transcription	Brain Substantia Nigra	brain
16	chr3:135738000-135758400	Weak transcription	Gastric	stomach
17	chr3:135738000-135761200	Weak transcription	Fetal Brain Male	brain
18	chr3:135738000-135775800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:135738200-135746600	Weak transcription	Fetal Stomach	stomach
20	chr3:135738200-135749600	Weak transcription	Brain Angular Gyrus	brain
21	chr3:135738400-135746400	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:135738400-135746800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr3:135738400-135763600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:135738400-135763600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:135738800-135745600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:135738800-135746400	Weak transcription	Adipose Nuclei	Adipose
27	chr3:135738800-135746400	Weak transcription	Fetal Lung	lung
28	chr3:135739600-135745800	Weak transcription	NHLF	lung
29	chr3:135739800-135746000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:135739800-135767800	Weak transcription	NHDF-Ad	bronchial
31	chr3:135740000-135746400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:135740000-135746800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:135740800-135745200	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr3:135741000-135745200	Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr3:135741000-135763600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:135741400-135745200	Active TSS	Right Atrium	heart
37	chr3:135741600-135743600	Active TSS	Fetal Muscle Trunk	muscle
38	chr3:135741600-135746000	Weak transcription	NH-A	brain
39	chr3:135741800-135743600	Active TSS	Right Ventricle	heart
40	chr3:135741800-135744200	Active TSS	Fetal Heart	heart
41	chr3:135741800-135744200	Active TSS	Fetal Muscle Leg	muscle
42	chr3:135741800-135745800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:135741800-135746600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:135741800-135746600	Weak transcription	Pancreas	Pancrea
45	chr3:135741800-135748000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:135741800-135748000	Weak transcription	Esophagus	oesophagus
47	chr3:135741800-135748000	Weak transcription	Osteobl	bone
48	chr3:135741800-135750000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:135741800-135759800	Weak transcription	Placenta	Placenta
50	chr3:135742000-135745800	Weak transcription	Stomach Smooth Muscle	stomach

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