Variant report

Variant	rs10512973
Chromosome Location	chr3:135626773-135626774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135626053..135627736-chr3:135684595..135686166,2	MCF-7	breast:
2	chr3:135616776..135618476-chr3:135625673..135627256,2	K562	blood:
3	chr3:135625811..135627915-chr3:135682871..135685242,3	MCF-7	breast:
4	chr3:135625715..135628669-chr3:135629036..135632014,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073711	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10512981	1.00[CHB][hapmap]
rs11929444	1.00[ASN][1000 genomes]
rs13097946	1.00[CHB][hapmap]
rs13098245	1.00[CHB][hapmap]
rs13325914	1.00[CHB][hapmap]
rs13434196	1.00[CHB][hapmap]
rs16843486	1.00[ASN][1000 genomes]
rs16843494	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16843509	1.00[CHB][hapmap]
rs16843653	0.81[YRI][hapmap]
rs17197552	1.00[CHB][hapmap]
rs2203851	1.00[ASN][1000 genomes]
rs2400730	1.00[ASN][1000 genomes]
rs35250006	1.00[ASN][1000 genomes]
rs35279847	1.00[ASN][1000 genomes]
rs4355231	1.00[ASN][1000 genomes]
rs57670168	1.00[ASN][1000 genomes]
rs58592880	1.00[ASN][1000 genomes]
rs59698186	1.00[ASN][1000 genomes]
rs60986685	1.00[ASN][1000 genomes]
rs6771997	1.00[CHB][hapmap]
rs6773511	0.84[YRI][hapmap]
rs6774289	1.00[CHB][hapmap]
rs6783238	0.84[YRI][hapmap]
rs6786769	1.00[CHB][hapmap]
rs6787502	1.00[ASN][1000 genomes]
rs6791233	1.00[ASN][1000 genomes]
rs6802139	1.00[CHB][hapmap]
rs6803447	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6807242	1.00[CHB][hapmap]
rs6809006	1.00[CHB][hapmap]
rs72979641	1.00[ASN][1000 genomes]
rs7621331	1.00[CHB][hapmap]
rs7621425	1.00[CHB][hapmap]
rs7622329	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7622352	0.83[AMR][1000 genomes]
rs7623246	1.00[ASN][1000 genomes]
rs7624531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627556	1.00[ASN][1000 genomes]
rs7631993	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7638129	1.00[CHB][hapmap]
rs7643661	1.00[CHB][hapmap]
rs7644688	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7644806	1.00[ASN][1000 genomes]
rs7652241	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs885427	1.00[ASN][1000 genomes]
rs9289503	1.00[CHB][hapmap]
rs9808979	1.00[CHB][hapmap]
rs9812561	1.00[CHB][hapmap]
rs9826806	1.00[CHB][hapmap]
rs9829329	1.00[CHB][hapmap]
rs9829476	1.00[CHB][hapmap]
rs9833470	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9839259	1.00[CHB][hapmap]
rs9842840	1.00[CHB][hapmap]
rs9844478	1.00[CHB][hapmap]
rs9849088	1.00[CHB][hapmap]
rs9864656	1.00[CHB][hapmap]
rs9872542	1.00[CHB][hapmap]
rs9883808	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135625600-135628200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:135626000-135626800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:135626000-135626800	Enhancers	HMEC	breast
4	chr3:135626000-135627800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:135626200-135628200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr3:135626400-135627400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:135626400-135627600	Flanking Active TSS	NHEK	skin
8	chr3:135626400-135627800	Enhancers	Placenta	Placenta

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