Variant report

Variant	rs16843494
Chromosome Location	chr3:135633726-135633727
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135632245..135634849-chr3:135636240..135637936,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10512973	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10512981	1.00[CHB][hapmap]
rs11929444	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097946	1.00[CHB][hapmap]
rs13098245	1.00[CHB][hapmap]
rs13325914	1.00[CHB][hapmap]
rs13434196	1.00[CHB][hapmap]
rs16843486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843509	1.00[CHB][hapmap]
rs17197552	1.00[CHB][hapmap]
rs2203851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2400730	1.00[ASN][1000 genomes]
rs35250006	1.00[ASN][1000 genomes]
rs35279847	1.00[ASN][1000 genomes]
rs4355231	1.00[ASN][1000 genomes]
rs57670168	1.00[ASN][1000 genomes]
rs58592880	1.00[ASN][1000 genomes]
rs59698186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60986685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771997	1.00[CHB][hapmap]
rs6774289	1.00[CHB][hapmap]
rs6786769	1.00[CHB][hapmap]
rs6787502	1.00[ASN][1000 genomes]
rs6791233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802139	1.00[CHB][hapmap]
rs6803447	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807242	1.00[CHB][hapmap]
rs6809006	1.00[CHB][hapmap]
rs72979641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621331	1.00[CHB][hapmap]
rs7621425	1.00[CHB][hapmap]
rs7622329	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622352	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623246	1.00[ASN][1000 genomes]
rs7624531	1.00[ASN][1000 genomes]
rs7624798	1.00[ASN][1000 genomes]
rs7627556	1.00[ASN][1000 genomes]
rs7631993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638129	1.00[CHB][hapmap]
rs7643661	1.00[CHB][hapmap]
rs7644688	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644806	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652241	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289503	1.00[CHB][hapmap]
rs9808979	1.00[CHB][hapmap]
rs9812561	1.00[CHB][hapmap]
rs9826806	1.00[CHB][hapmap]
rs9829329	1.00[CHB][hapmap]
rs9829476	1.00[CHB][hapmap]
rs9833470	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9839259	1.00[CHB][hapmap]
rs9842840	1.00[CHB][hapmap]
rs9844478	1.00[CHB][hapmap]
rs9849088	1.00[CHB][hapmap]
rs9864656	1.00[CHB][hapmap]
rs9872542	1.00[CHB][hapmap]
rs9883808	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16843494	TFEC	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135628200-135635800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:135633200-135635200	Weak transcription	Liver	Liver
3	chr3:135633600-135636400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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