Variant report

Variant	rs7627556
Chromosome Location	chr3:135615606-135615607
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10512973	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10512981	1.00[CHB][hapmap]
rs11929444	1.00[ASN][1000 genomes]
rs13097946	1.00[CHB][hapmap]
rs13098245	1.00[CHB][hapmap]
rs13325914	1.00[CHB][hapmap]
rs13434196	1.00[CHB][hapmap]
rs16843486	1.00[ASN][1000 genomes]
rs16843494	1.00[ASN][1000 genomes]
rs16843509	1.00[CHB][hapmap]
rs17197552	1.00[CHB][hapmap]
rs2203851	1.00[ASN][1000 genomes]
rs2400730	1.00[ASN][1000 genomes]
rs35250006	1.00[ASN][1000 genomes]
rs35279847	1.00[ASN][1000 genomes]
rs4355231	1.00[ASN][1000 genomes]
rs57670168	1.00[ASN][1000 genomes]
rs58515221	0.98[EUR][1000 genomes]
rs58592880	1.00[ASN][1000 genomes]
rs58726628	0.98[EUR][1000 genomes]
rs59332508	0.98[EUR][1000 genomes]
rs59698186	1.00[ASN][1000 genomes]
rs60986685	1.00[ASN][1000 genomes]
rs6439601	0.98[EUR][1000 genomes]
rs6771997	1.00[CHB][hapmap]
rs6774289	1.00[CHB][hapmap]
rs6776731	0.98[EUR][1000 genomes]
rs6786769	1.00[CHB][hapmap]
rs6787502	1.00[ASN][1000 genomes]
rs6791233	1.00[ASN][1000 genomes]
rs6802139	1.00[CHB][hapmap]
rs6803447	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6807242	1.00[CHB][hapmap]
rs6809006	1.00[CHB][hapmap]
rs72979641	1.00[ASN][1000 genomes]
rs7621331	1.00[CHB][hapmap]
rs7621425	1.00[CHB][hapmap]
rs7622329	1.00[ASN][1000 genomes]
rs7623246	1.00[ASN][1000 genomes]
rs7624531	1.00[ASN][1000 genomes]
rs7624798	1.00[ASN][1000 genomes]
rs7631993	1.00[ASN][1000 genomes]
rs7638129	1.00[CHB][hapmap]
rs7643661	1.00[CHB][hapmap]
rs7644688	1.00[ASN][1000 genomes]
rs7644806	1.00[ASN][1000 genomes]
rs7652241	1.00[ASN][1000 genomes]
rs885427	1.00[ASN][1000 genomes]
rs9289503	1.00[CHB][hapmap]
rs9808979	1.00[CHB][hapmap]
rs9812561	1.00[CHB][hapmap]
rs9826806	1.00[CHB][hapmap]
rs9829329	1.00[CHB][hapmap]
rs9829476	1.00[CHB][hapmap]
rs9833470	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9839259	1.00[CHB][hapmap]
rs9842840	1.00[CHB][hapmap]
rs9844478	1.00[CHB][hapmap]
rs9849088	1.00[CHB][hapmap]
rs9864656	1.00[CHB][hapmap]
rs9872542	1.00[CHB][hapmap]
rs9883808	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135613600-135616000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:135613800-135616200	Enhancers	HSMM	muscle
3	chr3:135613800-135617000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:135613800-135617000	Enhancers	NHDF-Ad	bronchial
5	chr3:135614200-135615800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:135614200-135616000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:135614200-135616000	Enhancers	NH-A	brain
8	chr3:135614200-135616000	Enhancers	NHLF	lung
9	chr3:135614200-135616200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:135614200-135616200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:135614200-135616200	Enhancers	HMEC	breast
12	chr3:135614200-135616200	Enhancers	HSMMtube	muscle
13	chr3:135614200-135616200	Enhancers	NHEK	skin
14	chr3:135614200-135616400	Enhancers	Osteobl	bone
15	chr3:135614200-135617000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:135614200-135617000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:135615000-135616000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:135615000-135616600	Enhancers	Placenta	Placenta
19	chr3:135615000-135617000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:135615200-135616000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:135615200-135616200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:135615400-135615800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:135615400-135616000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:135615600-135616000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr3:135615600-135616200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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