Variant report

Variant	rs11929444
Chromosome Location	chr3:135636315-135636316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135634384..135636473-chr3:135692724..135694710,2	MCF-7	breast:
2	chr3:135632245..135634849-chr3:135636240..135637936,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10512973	1.00[ASN][1000 genomes]
rs16843486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203851	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2400730	1.00[ASN][1000 genomes]
rs35250006	1.00[ASN][1000 genomes]
rs35279847	1.00[ASN][1000 genomes]
rs4355231	1.00[ASN][1000 genomes]
rs57670168	1.00[ASN][1000 genomes]
rs58592880	1.00[ASN][1000 genomes]
rs59698186	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60986685	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787502	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6791233	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72979641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622352	1.00[EUR][1000 genomes]
rs7623246	1.00[ASN][1000 genomes]
rs7624531	1.00[ASN][1000 genomes]
rs7624798	1.00[ASN][1000 genomes]
rs7627556	1.00[ASN][1000 genomes]
rs7631993	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885427	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833470	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135633600-135636400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:135635400-135637200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr3:135635800-135636400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:135635800-135638000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:135636000-135636600	Enhancers	NHEK	skin
6	chr3:135636200-135637000	Weak transcription	Psoas Muscle	Psoas
7	chr3:135636200-135640400	Weak transcription	Pancreas	Pancrea
8	chr3:135636200-135640600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:135636200-135641400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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