Variant report

Variant	rs6773642
Chromosome Location	chr3:155701764-155701765
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:59)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:59 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:155701626-155702002	MCF-7	breast:	n/a	n/a
2	CTCF	chr3:155701720-155701870	HRPEpiC	eye:	n/a	n/a
3	CTCF	chr3:155701720-155701870	NHLF	lung:	n/a	n/a
4	CTCF	chr3:155701725-155701931	K562	blood:	n/a	n/a
5	CTCF	chr3:155701760-155701910	Caco-2	colon:	n/a	n/a
6	CTCF	chr3:155701740-155701890	Caco-2	colon:	n/a	n/a
7	CTCF	chr3:155701640-155701790	HPAF	blood vessel:	n/a	n/a
8	CTCF	chr3:155701720-155701870	BE2_C	brain:	n/a	n/a
9	RAD21	chr3:155701683-155701873	SK-N-SH_RA	brain:	n/a	n/a
10	CTCF	chr3:155701681-155701961	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr3:155701740-155701890	HCPEpiC	choroid plexus:	n/a	n/a
12	CTCF	chr3:155701740-155701890	HMF	breast:	n/a	n/a
13	RAD21	chr3:155701626-155701924	ECC-1	luminal epithelium:	n/a	n/a
14	CTCF	chr3:155701702-155701971	K562	blood:	n/a	n/a
15	RAD21	chr3:155701680-155701924	SK-N-SH_RA	brain:	n/a	n/a
16	RAD21	chr3:155701754-155701874	K562	blood:	n/a	n/a
17	CTCF	chr3:155701680-155701830	HVMF	connective:	n/a	n/a
18	CTCF	chr3:155701760-155701910	HCPEpiC	choroid plexus:	n/a	n/a
19	CTCF	chr3:155701743-155701906	MCF-7	breast:	n/a	n/a
20	ZNF143	chr3:155701704-155701926	K562	blood:	n/a	n/a
21	CTCF	chr3:155701700-155701850	HAc	cerebellar:	n/a	n/a
22	CTCF	chr3:155701760-155701910	SAEC	small airway:	n/a	n/a
23	CTCF	chr3:155701596-155702043	MCF-7	breast:	n/a	n/a
24	CTCF	chr3:155701660-155701810	HCT-116	colon:	n/a	n/a
25	CTCF	chr3:155701760-155701910	HMEC	breast:	n/a	n/a
26	CTCF	chr3:155701654-155701970	IMR90	lung:	n/a	n/a
27	CTCF	chr3:155701760-155701910	AG04450	lung:	n/a	n/a
28	CTCF	chr3:155701720-155701870	HepG2	liver:	n/a	n/a
29	CTCF	chr3:155701660-155701810	HVMF	connective:	n/a	n/a
30	CTCF	chr3:155701700-155701850	AG10803	skin:	n/a	n/a
31	CTCF	chr3:155701700-155701850	HRPEpiC	eye:	n/a	n/a
32	RAD21	chr3:155701546-155701952	HCT-116	colon:	n/a	n/a
33	CTCF	chr3:155701751-155701904	Medullo	brain:	n/a	n/a
34	RAD21	chr3:155701735-155701915	IMR90	lung:	n/a	n/a
35	CTCF	chr3:155701632-155702055	K562	blood:	n/a	n/a
36	CTCF	chr3:155701740-155702030	AG09319	gingival:	n/a	n/a
37	CTCF	chr3:155701720-155701870	HEK293	kidney:	n/a	n/a
38	RAD21	chr3:155701660-155702097	MCF-7	breast:	n/a	n/a
39	CTCF	chr3:155701720-155701870	K562	blood:	n/a	n/a
40	CTCF	chr3:155701760-155701910	HCM	heart:	n/a	n/a
41	RAD21	chr3:155701600-155702070	HCT-116	colon:	n/a	n/a
42	CTCF	chr3:155701720-155701870	WERI-Rb-1	eye:	n/a	n/a
43	RAD21	chr3:155701560-155701952	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTCF	chr3:155701660-155701810	HMEC	breast:	n/a	n/a
45	CTCF	chr3:155701760-155701910	RPTEC	kidney:	n/a	n/a
46	CTCF	chr3:155701720-155701870	HA-sp	spinal cord:	n/a	n/a
47	RAD21	chr3:155701660-155701967	H1-hESC	embryonic stem cell:	n/a	n/a
48	CTCF	chr3:155701760-155701910	HPF	lung:	n/a	n/a
49	CTCF	chr3:155701720-155701870	AG09309	skin:	n/a	n/a
50	CTCF	chr3:155701680-155701830	HMF	breast:	n/a	n/a

No data

Variant related genes	Relation type
SETP14	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11706359	0.89[TSI][hapmap]
rs1711084	0.81[CHD][hapmap];0.81[MKK][hapmap]
rs819858	0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6773642	SLC33A1	cis	cerebellum	SCAN
rs6773642	SLC33A1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155700000-155701800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:155701600-155701800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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