Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155700002..155701632-chr3:155703607..155706090,2	K562	blood:

Variant related genes	Relation type
ENSG00000240489	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10936022	0.86[ASN][1000 genomes]
rs11712694	0.80[ASN][1000 genomes]
rs12636569	0.82[ASN][1000 genomes]
rs12638792	0.82[ASN][1000 genomes]
rs12638836	0.82[ASN][1000 genomes]
rs1356252	0.82[ASN][1000 genomes]
rs1878211	0.82[ASN][1000 genomes]
rs2067877	0.82[ASN][1000 genomes]
rs28438758	0.82[ASN][1000 genomes]
rs3772112	0.85[ASN][1000 genomes]
rs401514	1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs406701	0.80[ASN][1000 genomes]
rs4679757	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4679758	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs4680222	0.87[ASN][1000 genomes]
rs6441022	1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs6441023	0.94[CHB][hapmap]
rs6766927	0.80[ASN][1000 genomes]
rs6773642	0.81[CHD][hapmap];0.81[MKK][hapmap]
rs6806109	0.80[ASN][1000 genomes]
rs819844	0.89[ASN][1000 genomes]
rs819854	0.86[ASN][1000 genomes]
rs819858	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs843931	0.89[ASN][1000 genomes]
rs847800	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs965034	0.89[ASN][1000 genomes]
rs9820534	0.82[ASN][1000 genomes]
rs9825321	0.82[ASN][1000 genomes]
rs9846097	0.81[ASN][1000 genomes]
rs9866164	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1711084	SLC33A1	cis	cerebellum	SCAN
rs1711084	SLC33A1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155699400-155700200	Enhancers	Osteobl	bone
2	chr3:155699400-155700400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:155699600-155700200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:155699600-155700200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:155699600-155700200	Enhancers	NH-A	brain
6	chr3:155700000-155700200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:155700000-155701800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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