Variant report

Variant	rs4679757
Chromosome Location	chr3:155651078-155651079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155523580..155525995-chr3:155648700..155651381,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174928	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11712694	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12634592	0.85[AFR][1000 genomes]
rs12636569	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12638792	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12638836	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1356252	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs168587	0.83[CEU][hapmap]
rs1711084	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1878211	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2067877	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2320318	0.95[EUR][1000 genomes]
rs28438758	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs358718	0.83[CEU][hapmap]
rs3772112	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3772117	0.83[AFR][1000 genomes]
rs389893	0.83[CEU][hapmap]
rs401514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs406701	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs445758	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4679758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4680220	0.83[AFR][1000 genomes]
rs4680222	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs519400	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60788059	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6441023	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6764439	0.84[CEU][hapmap]
rs6766927	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6775044	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6777776	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6797289	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6806109	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7637461	0.83[CEU][hapmap]
rs819844	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs819858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs843931	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs847800	0.83[ASN][1000 genomes]
rs965034	0.82[AMR][1000 genomes]
rs9820534	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9825321	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9846097	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9866164	0.84[ASN][1000 genomes]
rs9875112	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:155603800-155657800	Weak transcription	Esophagus	oesophagus
3	chr3:155604400-155658600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:155607200-155656800	Weak transcription	Small Intestine	intestine
5	chr3:155607400-155669000	Weak transcription	Pancreas	Pancrea
6	chr3:155608800-155654800	Weak transcription	Aorta	Aorta
7	chr3:155609200-155657200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:155609600-155652000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:155631000-155651600	Weak transcription	Fetal Heart	heart
10	chr3:155633800-155668200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:155634200-155654600	Weak transcription	Spleen	Spleen
12	chr3:155634400-155654200	Weak transcription	Colonic Mucosa	Colon
13	chr3:155634600-155656200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:155634600-155660600	Weak transcription	Stomach Mucosa	stomach
15	chr3:155635000-155653200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:155635400-155653200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:155635800-155652800	Weak transcription	Ovary	ovary
18	chr3:155635800-155653000	Weak transcription	Lung	lung
19	chr3:155635800-155654400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr3:155635800-155658000	Weak transcription	Fetal Kidney	kidney
21	chr3:155635800-155664400	Weak transcription	Gastric	stomach
22	chr3:155636000-155653200	Weak transcription	HSMMtube	muscle
23	chr3:155638000-155654600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:155639600-155654600	Weak transcription	Psoas Muscle	Psoas
25	chr3:155639600-155664400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:155639600-155671000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:155642400-155654000	Weak transcription	HepG2	liver
28	chr3:155643600-155652600	Weak transcription	Fetal Brain Female	brain
29	chr3:155643800-155651400	Weak transcription	Primary B cells from cord blood	blood
30	chr3:155643800-155652000	Weak transcription	GM12878-XiMat	blood
31	chr3:155643800-155652600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr3:155644000-155652000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:155644000-155652000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr3:155644000-155652000	Weak transcription	NHLF	lung
35	chr3:155644000-155652200	Weak transcription	HMEC	breast
36	chr3:155644000-155653000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr3:155644000-155653200	Weak transcription	Brain Anterior Caudate	brain
38	chr3:155644000-155653200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr3:155644000-155653800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr3:155644000-155654000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr3:155644000-155654600	Weak transcription	Fetal Brain Male	brain
42	chr3:155644000-155654800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr3:155644000-155657200	Weak transcription	Right Ventricle	heart
44	chr3:155644000-155663600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:155644000-155666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr3:155644200-155651400	Weak transcription	Primary T cells from cord blood	blood
47	chr3:155644200-155651800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr3:155644200-155652000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr3:155644200-155652000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr3:155644200-155652000	Weak transcription	Duodenum Mucosa	Duodenum

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