Variant report

Variant	rs519400
Chromosome Location	chr3:155578830-155578831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155569501..155576246-chr3:155578051..155582871,10	K562	blood:
2	chr3:155577298..155579024-chr3:155587973..155590520,2	MCF-7	breast:
3	chr3:155568463..155575692-chr3:155576220..155581983,14	K562	blood:
4	chr3:155572250..155574131-chr3:155576263..155579798,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169359	Chromatin interaction
ENSG00000163655	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11712694	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12636569	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12638792	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12638836	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1356252	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1878211	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2067877	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2320318	0.89[EUR][1000 genomes]
rs28438758	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3772112	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs401514	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs406701	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs445758	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4679757	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4679758	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4680222	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60788059	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441022	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6441023	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6766927	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6775044	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6777776	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6797289	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6806109	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs819844	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs819858	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs843931	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9820534	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9825321	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9846097	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155573200-155579600	Weak transcription	Dnd41	blood
2	chr3:155573200-155579800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:155573400-155579600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:155573400-155579600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:155575800-155587400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:155576400-155580400	Weak transcription	Fetal Thymus	thymus
7	chr3:155577800-155581000	Weak transcription	Hela-S3	cervix
8	chr3:155578000-155579400	Weak transcription	HepG2	liver
9	chr3:155578000-155580400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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