Variant report

Variant	rs843931
Chromosome Location	chr3:155666833-155666834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155659879..155663978-chr3:155664287..155669186,7	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10936021	0.84[AFR][1000 genomes]
rs11712694	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12634282	0.80[AFR][1000 genomes]
rs12636569	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12638792	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12638836	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1356252	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1711084	0.89[ASN][1000 genomes]
rs1878211	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2067877	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2320318	0.93[EUR][1000 genomes]
rs28438758	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2874232	0.82[AFR][1000 genomes]
rs3772112	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs401514	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs406701	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs445758	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4679757	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4679758	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680222	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs519400	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60788059	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6441022	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441023	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6766927	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6775044	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6777776	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6797289	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6806109	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs819844	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819858	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs847800	0.88[ASN][1000 genomes]
rs965034	0.80[ASN][1000 genomes]
rs9820534	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9825321	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9846097	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9866164	0.89[ASN][1000 genomes]
rs9875112	0.87[EUR][1000 genomes]
rs9883153	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:155607400-155669000	Weak transcription	Pancreas	Pancrea
3	chr3:155633800-155668200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:155639600-155671000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:155649000-155667400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:155654200-155675800	Weak transcription	NHEK	skin
7	chr3:155655200-155667600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:155656000-155667200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:155656200-155670400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:155656600-155667000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:155657000-155667200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:155657000-155667200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:155657200-155668200	Weak transcription	K562	blood
14	chr3:155657200-155669000	Weak transcription	Fetal Lung	lung
15	chr3:155657200-155678200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:155657600-155667200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:155658000-155667000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:155658200-155668200	Weak transcription	Placenta	Placenta
19	chr3:155658600-155667400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:155659600-155668800	Weak transcription	Fetal Thymus	thymus
21	chr3:155659800-155668800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:155659800-155669400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:155659800-155678800	Weak transcription	A549	lung
24	chr3:155660400-155688000	Weak transcription	Hela-S3	cervix
25	chr3:155663600-155667400	Enhancers	NHDF-Ad	bronchial
26	chr3:155663600-155676200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:155664200-155679200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:155664400-155679200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:155664600-155670000	Weak transcription	NHLF	lung
30	chr3:155664600-155676400	Weak transcription	HSMMtube	muscle
31	chr3:155664600-155677400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:155664600-155677600	Weak transcription	HSMM	muscle
33	chr3:155664600-155681200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:155664800-155667400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:155665600-155675800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:155666000-155667400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:155666200-155667600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:155666600-155667000	Enhancers	Osteobl	bone
39	chr3:155666600-155668000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr3:155666800-155667000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:155666800-155667000	Enhancers	Lung	lung
42	chr3:155666800-155667200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr3:155666800-155667400	Enhancers	Ovary	ovary
44	chr3:155666800-155667800	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr3:155666800-155668400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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