Variant report

Variant	rs445758
Chromosome Location	chr3:155592667-155592668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155461486..155465793-chr3:155586998..155592801,6	K562	blood:
2	chr3:155592593..155594933-chr3:155624900..155626910,3	K562	blood:
3	chr3:155568718..155574348-chr3:155586235..155593210,15	K562	blood:
4	chr3:155571716..155573731-chr3:155592012..155594000,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114805	Chromatin interaction
ENSG00000214919	Chromatin interaction
ENSG00000169359	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11712694	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12636569	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12638792	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12638836	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1356252	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1878211	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2067877	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2320318	0.97[EUR][1000 genomes]
rs28438758	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3772112	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs401514	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs406701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4679757	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4679758	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4680222	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs519400	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60788059	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441022	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6441023	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766927	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6775044	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6777776	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6797289	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6806109	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs819844	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs819858	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs843931	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9820534	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9825321	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846097	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9875112	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155589600-155599600	Weak transcription	Spleen	Spleen
2	chr3:155589800-155592800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:155589800-155596600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:155589800-155596600	Weak transcription	Lung	lung
5	chr3:155589800-155607000	Weak transcription	Pancreas	Pancrea
6	chr3:155590000-155592800	Weak transcription	Aorta	Aorta
7	chr3:155590000-155592800	Weak transcription	Psoas Muscle	Psoas
8	chr3:155590000-155593000	Weak transcription	Gastric	stomach
9	chr3:155590000-155599400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:155590200-155592800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:155590200-155592800	Weak transcription	Ovary	ovary
12	chr3:155590200-155593000	Weak transcription	Left Ventricle	heart
13	chr3:155590200-155593000	Weak transcription	Right Atrium	heart
14	chr3:155590200-155594000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:155590200-155596600	Weak transcription	Thymus	Thymus
16	chr3:155590200-155599000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:155590200-155599400	Weak transcription	Right Ventricle	heart
18	chr3:155590200-155608400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:155590200-155643000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:155590400-155592800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr3:155590400-155592800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:155590400-155593200	Weak transcription	Fetal Heart	heart
24	chr3:155590400-155593800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:155590400-155594200	Weak transcription	Fetal Stomach	stomach
26	chr3:155590400-155594800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr3:155590400-155596600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:155590600-155593000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:155590600-155597800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:155590800-155592800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:155590800-155593200	Weak transcription	Fetal Brain Female	brain
32	chr3:155590800-155593800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:155590800-155593800	Weak transcription	Fetal Brain Male	brain
34	chr3:155590800-155607200	Weak transcription	Brain Angular Gyrus	brain
35	chr3:155591000-155593200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:155591000-155593200	Weak transcription	Osteobl	bone
37	chr3:155591000-155593400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr3:155591000-155593800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:155591000-155594000	Weak transcription	Brain Anterior Caudate	brain
40	chr3:155591000-155594000	Weak transcription	HSMM	muscle
41	chr3:155591000-155594200	Weak transcription	Brain Germinal Matrix	brain
42	chr3:155591000-155595000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr3:155591000-155595400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr3:155591000-155595400	Weak transcription	HMEC	breast
45	chr3:155591000-155596000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:155591000-155598000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr3:155591000-155598200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:155591000-155599000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr3:155591000-155599200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:155591000-155599400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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