Variant report

Variant	rs4679758
Chromosome Location	chr3:155658252-155658253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11712694	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634592	0.84[AFR][1000 genomes]
rs12636569	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12638792	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12638836	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1356252	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1711084	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1878211	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2067877	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2320318	0.94[EUR][1000 genomes]
rs28438758	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3772112	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs401514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs406701	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs445758	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4679757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4680222	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs519400	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60788059	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6441022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6441023	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6766927	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6775044	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6777776	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6797289	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6806109	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71310456	0.81[AFR][1000 genomes]
rs819844	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs819858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs843931	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs847800	0.86[ASN][1000 genomes]
rs9820534	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9825321	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9846097	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9866164	0.87[ASN][1000 genomes]
rs9875112	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155590200-155667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:155604400-155658600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:155607400-155669000	Weak transcription	Pancreas	Pancrea
4	chr3:155633800-155668200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:155634600-155660600	Weak transcription	Stomach Mucosa	stomach
6	chr3:155635800-155664400	Weak transcription	Gastric	stomach
7	chr3:155639600-155664400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:155639600-155671000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:155644000-155663600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:155644000-155666800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:155644200-155659800	Weak transcription	Brain Angular Gyrus	brain
12	chr3:155644200-155662000	Weak transcription	Brain Germinal Matrix	brain
13	chr3:155644200-155665200	Weak transcription	Fetal Stomach	stomach
14	chr3:155646200-155665200	Weak transcription	Fetal Intestine Small	intestine
15	chr3:155648400-155661800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:155648400-155663000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:155648600-155658600	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:155648600-155659400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:155648600-155659600	Strong transcription	Fetal Thymus	thymus
20	chr3:155648600-155659800	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:155648600-155659800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:155648600-155661000	Strong transcription	Dnd41	blood
23	chr3:155649000-155667400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:155649400-155658600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:155649600-155658800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:155649600-155658800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:155649600-155659800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:155649600-155660400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr3:155650400-155658800	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:155651200-155659000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:155651400-155658400	Strong transcription	Primary B cells from cord blood	blood
32	chr3:155651800-155659000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr3:155651800-155659800	Strong transcription	A549	lung
34	chr3:155652000-155658400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr3:155652000-155659600	Strong transcription	Liver	Liver
36	chr3:155652400-155659600	Strong transcription	HUVEC	blood vessel
37	chr3:155652600-155661000	Weak transcription	Fetal Heart	heart
38	chr3:155652800-155658800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:155652800-155659800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr3:155653000-155660400	Strong transcription	Hela-S3	cervix
41	chr3:155653200-155662200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr3:155653400-155659600	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr3:155653600-155658400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:155654200-155658800	Strong transcription	HSMM	muscle
45	chr3:155654200-155675800	Weak transcription	NHEK	skin
46	chr3:155655000-155659600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr3:155655200-155659800	Weak transcription	Psoas Muscle	Psoas
48	chr3:155655200-155661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:155655200-155663600	Weak transcription	HSMMtube	muscle
50	chr3:155655200-155666800	Weak transcription	Lung	lung

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