Variant report

Variant	rs6773751
Chromosome Location	chr3:119581086-119581087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10433404	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10934500	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10934502	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10934503	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11915717	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11917714	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12054090	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12108149	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12629015	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12630829	0.80[AFR][1000 genomes]
rs12634476	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12634889	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12635018	0.80[AFR][1000 genomes]
rs12638973	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1574154	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16830567	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1870931	0.80[AFR][1000 genomes]
rs1980718	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2276707	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2873950	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28831519	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3814057	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3814058	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4340737	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4624596	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4688042	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4688046	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4688047	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4688054	0.80[ASN][1000 genomes]
rs56728675	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57939147	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58493895	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60389731	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60393216	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62264706	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62264708	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62264714	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62264734	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62264739	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62264742	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62264743	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62264747	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs62264749	0.80[AFR][1000 genomes]
rs6797459	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6808874	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7633279	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7639388	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv829696	chr3:119567659-119711405	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
6	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119529600-119582000	Weak transcription	Spleen	Spleen
2	chr3:119541000-119581600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:119541200-119587000	Weak transcription	Gastric	stomach
4	chr3:119542400-119581200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:119542600-119581600	Weak transcription	HUVEC	blood vessel
6	chr3:119545200-119583400	Weak transcription	Brain Angular Gyrus	brain
7	chr3:119545800-119581600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:119546000-119663400	Weak transcription	Lung	lung
9	chr3:119548600-119581600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:119549200-119581600	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:119551400-119594600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:119551800-119581400	Weak transcription	Osteobl	bone
13	chr3:119552200-119582000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:119561200-119581400	Weak transcription	Hela-S3	cervix
15	chr3:119561200-119581600	Weak transcription	Right Ventricle	heart
16	chr3:119561200-119581600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:119561200-119591200	Weak transcription	Stomach Mucosa	stomach
18	chr3:119562400-119611000	Weak transcription	Fetal Stomach	stomach
19	chr3:119562600-119581600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr3:119564000-119581800	Weak transcription	Brain Substantia Nigra	brain
21	chr3:119566000-119581600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:119566800-119586000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:119567000-119605200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:119569400-119629400	Weak transcription	Esophagus	oesophagus
25	chr3:119570200-119581600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr3:119574600-119631600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:119574800-119581800	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:119574800-119583000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:119575000-119583000	Strong transcription	Fetal Thymus	thymus
30	chr3:119575000-119583400	Weak transcription	Pancreas	Pancrea
31	chr3:119575000-119583800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr3:119575000-119583800	Strong transcription	Primary B cells from peripheral blood	blood
33	chr3:119575000-119585400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:119575000-119585800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr3:119575000-119586800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:119575000-119588000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:119575400-119583800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:119575600-119584200	Strong transcription	Primary T cells from cord blood	blood
39	chr3:119576200-119581600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:119576600-119582400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:119576600-119584000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:119577000-119581200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:119577000-119581400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr3:119577000-119598800	Weak transcription	Fetal Brain Male	brain
45	chr3:119577400-119581600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr3:119577400-119581600	Weak transcription	Brain Anterior Caudate	brain
47	chr3:119577400-119585200	Strong transcription	Primary B cells from cord blood	blood
48	chr3:119577400-119585200	Strong transcription	HSMM	muscle
49	chr3:119577400-119596600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr3:119577600-119581400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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