Variant report

Variant	rs6774721
Chromosome Location	chr3:49381898-49381899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:62501751..62503501-chr3:49379997..49382332,2	MCF-7	breast:
2	chr3:49377677..49379380-chr3:49380905..49382983,2	K562	blood:
3	chr3:49376333..49378234-chr3:49381279..49382912,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114316	Chromatin interaction
ENSG00000108654	Chromatin interaction
ENSG00000258890	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73073005	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73073007	1.00[ASN][1000 genomes]
rs73074830	1.00[ASN][1000 genomes]
rs73074855	1.00[ASN][1000 genomes]
rs73088122	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088161	1.00[ASN][1000 genomes]
rs7623687	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638643	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6774721	IHPK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49378400-49382400	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:49378600-49382000	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:49378600-49382000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:49378600-49382000	Weak transcription	NHDF-Ad	bronchial
5	chr3:49378600-49382400	Weak transcription	Osteobl	bone
6	chr3:49378600-49382600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:49378600-49382600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:49378600-49382600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:49378600-49382600	Weak transcription	NH-A	brain
10	chr3:49378600-49383800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:49378600-49383800	Weak transcription	NHEK	skin
12	chr3:49378600-49384000	Weak transcription	NHLF	lung
13	chr3:49378600-49384200	Weak transcription	HSMMtube	muscle
14	chr3:49378600-49384400	Weak transcription	Psoas Muscle	Psoas
15	chr3:49378600-49385200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:49378600-49386400	Weak transcription	K562	blood
17	chr3:49378600-49386600	Weak transcription	Stomach Mucosa	stomach
18	chr3:49378600-49386800	Weak transcription	Gastric	stomach
19	chr3:49378600-49388400	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:49378600-49388800	Weak transcription	Brain Substantia Nigra	brain
21	chr3:49378600-49388800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:49378600-49390000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:49378600-49392000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr3:49378800-49382000	Weak transcription	Hela-S3	cervix
25	chr3:49378800-49382600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:49378800-49382600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:49378800-49382600	Weak transcription	HMEC	breast
28	chr3:49378800-49383400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr3:49378800-49383800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:49378800-49384000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:49378800-49384200	Enhancers	Adipose Nuclei	Adipose
32	chr3:49378800-49386800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:49378800-49387400	Weak transcription	Esophagus	oesophagus
34	chr3:49379000-49383800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:49379000-49384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:49379000-49385800	Weak transcription	Fetal Intestine Large	intestine
37	chr3:49379000-49385800	Weak transcription	Fetal Intestine Small	intestine
38	chr3:49379000-49392000	Weak transcription	Left Ventricle	heart
39	chr3:49379400-49384000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:49379600-49382200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:49379600-49382200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:49379600-49382400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr3:49379600-49382600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:49379600-49382600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr3:49379600-49384000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:49379600-49384200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr3:49379600-49384200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:49379800-49386600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr3:49379800-49392800	Weak transcription	Thymus	Thymus
50	chr3:49380000-49382000	Weak transcription	Primary T cells fromperipheralblood	blood

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