Variant report

Variant	rs73073007
Chromosome Location	chr3:49496059-49496060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49494808..49501210-chr3:49505386..49509341,14	MCF-7	breast:
2	chr3:49493044..49494602-chr3:49495069..49497320,2	K562	blood:
3	chr3:49492642..49496554-chr3:49506266..49510118,5	MCF-7	breast:
4	chr3:49493317..49496589-chr3:49498122..49502213,4	K562	blood:

Variant related genes	Relation type
ENSG00000173402	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6774721	1.00[ASN][1000 genomes]
rs73073005	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73074830	1.00[ASN][1000 genomes]
rs73074855	1.00[ASN][1000 genomes]
rs73077107	1.00[ASN][1000 genomes]
rs73077157	1.00[ASN][1000 genomes]
rs73088122	1.00[ASN][1000 genomes]
rs73088161	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623687	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638643	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49482000-49498200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:49486600-49498600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:49490600-49506600	Enhancers	Fetal Muscle Leg	muscle
4	chr3:49491800-49506200	Enhancers	Placenta	Placenta
5	chr3:49492600-49498000	Weak transcription	Stomach Mucosa	stomach
6	chr3:49492800-49496200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:49492800-49496200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:49492800-49496200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:49492800-49496200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:49492800-49496400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:49492800-49496400	Weak transcription	Fetal Kidney	kidney
12	chr3:49492800-49496400	Weak transcription	Lung	lung
13	chr3:49492800-49498800	Weak transcription	Right Atrium	heart
14	chr3:49492800-49499200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:49493000-49496200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:49493000-49496200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:49493000-49496200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:49493000-49496200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:49493000-49496200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:49493000-49496200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:49493000-49496200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:49493000-49496200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr3:49493000-49496200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:49493000-49496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:49493000-49496400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:49493000-49496400	Weak transcription	Ovary	ovary
27	chr3:49493000-49496600	Weak transcription	Gastric	stomach
28	chr3:49493000-49498400	Weak transcription	Esophagus	oesophagus
29	chr3:49493200-49496200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:49493200-49496200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:49493200-49496200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr3:49493200-49496200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr3:49493200-49496200	Weak transcription	Fetal Stomach	stomach
34	chr3:49493200-49496400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:49493200-49498600	Weak transcription	Spleen	Spleen
36	chr3:49493400-49496400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:49493400-49498800	Weak transcription	Adipose Nuclei	Adipose
38	chr3:49493600-49497800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:49493800-49496400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr3:49494000-49496200	Weak transcription	HepG2	liver
41	chr3:49494000-49496400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:49494000-49498600	Weak transcription	Left Ventricle	heart
43	chr3:49494000-49498800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:49494000-49498800	Weak transcription	Psoas Muscle	Psoas
45	chr3:49494200-49496800	Weak transcription	Fetal Heart	heart
46	chr3:49494200-49497800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr3:49494200-49497800	Weak transcription	HMEC	breast
48	chr3:49494200-49498200	Weak transcription	NHEK	skin
49	chr3:49494200-49498600	Weak transcription	NHLF	lung
50	chr3:49494200-49499000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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