Variant report

Variant	rs6775561
Chromosome Location	chr3:177702174-177702175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10936960	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13066104	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13087011	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13314585	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1362829	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1421157	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1421158	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1421161	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1421162	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1421166	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1421173	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1895068	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1895072	0.81[EUR][1000 genomes]
rs2160836	0.82[EUR][1000 genomes]
rs57315928	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6769109	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6775970	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6783796	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6787124	0.80[EUR][1000 genomes]
rs6804905	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6807952	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6808901	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs737553	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs737555	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9830203	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9838142	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9862300	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9875424	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997975	chr3:177664921-177719623	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177700400-177702800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links