Variant report

Variant	rs2160836
Chromosome Location	chr3:177710225-177710226
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:177709402..177711641-chr3:177711937..177714399,2	K562	blood:
2	chr3:177076309..177079025-chr3:177709045..177711034,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1075544	0.89[ASN][1000 genomes]
rs10936960	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11919677	0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11920776	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11922170	0.86[ASN][1000 genomes]
rs12492409	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs12495203	0.95[ASN][1000 genomes]
rs13062823	0.86[JPT][hapmap]
rs13066104	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13087011	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13314585	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1362829	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1421157	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1421158	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1421160	0.89[ASN][1000 genomes]
rs1421161	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1421162	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1421166	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1421167	0.93[ASN][1000 genomes]
rs1421173	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16828811	0.86[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs1895068	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1895072	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1895073	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3961634	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3978728	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs57315928	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6443528	0.86[AMR][1000 genomes]
rs6769109	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6775561	0.82[EUR][1000 genomes]
rs6775970	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6776256	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6783796	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6786110	0.86[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6804905	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6807952	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6808901	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs737553	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs737555	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7619802	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7645977	0.88[ASN][1000 genomes]
rs9830203	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9838142	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9862300	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9875424	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997975	chr3:177664921-177719623	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2160836	DAPK1	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177710000-177711800	Enhancers	Fetal Intestine Large	intestine
2	chr3:177710200-177711600	Enhancers	Fetal Intestine Small	intestine
3	chr3:177710200-177711600	Enhancers	HepG2	liver

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