Variant report

Variant	rs7619802
Chromosome Location	chr3:177661382-177661383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:177534496..177537087-chr3:177660637..177662503,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231574	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1075544	0.82[ASN][1000 genomes]
rs10936960	0.82[ASN][1000 genomes]
rs11919677	0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs11920776	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs11922170	0.82[ASN][1000 genomes]
rs12489750	0.95[ASN][1000 genomes]
rs12492069	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12492409	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs12497387	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13062823	0.82[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs13066104	0.82[ASN][1000 genomes]
rs13074448	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13075342	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13087011	0.82[ASN][1000 genomes]
rs13314585	0.82[ASN][1000 genomes]
rs1421157	0.82[ASN][1000 genomes]
rs1421158	0.82[ASN][1000 genomes]
rs1421160	0.82[ASN][1000 genomes]
rs1421161	0.82[ASN][1000 genomes]
rs1421162	0.82[ASN][1000 genomes]
rs1421163	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1421164	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1421169	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1421170	0.82[ASN][1000 genomes]
rs1421173	0.82[ASN][1000 genomes]
rs1582399	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16828811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16828819	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1861886	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1895068	0.82[ASN][1000 genomes]
rs34300091	0.82[ASN][1000 genomes]
rs34534264	0.95[ASN][1000 genomes]
rs34603970	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34969108	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35006769	0.81[EUR][1000 genomes]
rs35494413	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35569214	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35751119	0.99[ASN][1000 genomes]
rs3978728	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs57315928	0.82[ASN][1000 genomes]
rs6769109	0.82[ASN][1000 genomes]
rs6786110	0.82[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs6804905	0.82[ASN][1000 genomes]
rs737553	0.82[ASN][1000 genomes]
rs737555	0.82[ASN][1000 genomes]
rs7616735	0.86[ASN][1000 genomes]
rs7645977	0.84[ASN][1000 genomes]
rs9838142	0.82[ASN][1000 genomes]
rs9862300	0.82[ASN][1000 genomes]
rs9875424	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177653600-177662200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:177660800-177662200	Enhancers	Dnd41	blood
3	chr3:177661000-177662200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr3:177661000-177662200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:177661000-177664000	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:177661000-177664000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:177661200-177662000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr3:177661200-177662000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:177661200-177662200	Enhancers	Primary T cells from cord blood	blood
10	chr3:177661200-177662600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:177661200-177662800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:177661200-177663400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:177661200-177663800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr3:177661200-177664000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr3:177661200-177664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:177661200-177665800	Enhancers	Primary monocytes fromperipheralblood	blood

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