Variant report

Variant	rs35494413
Chromosome Location	chr3:177653181-177653182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNMB2-1	chr3:177652978-177653272	XLOC_002935

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11919677	0.84[ASN][1000 genomes]
rs11920776	0.87[ASN][1000 genomes]
rs11922170	0.80[ASN][1000 genomes]
rs12489750	0.99[ASN][1000 genomes]
rs12492069	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12492409	0.99[ASN][1000 genomes]
rs12496207	0.80[ASN][1000 genomes]
rs12497387	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13062823	0.99[ASN][1000 genomes]
rs13074448	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13075342	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421163	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1421164	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1421169	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1421170	0.86[ASN][1000 genomes]
rs1582399	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16828811	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16828819	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1861886	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1895075	0.80[ASN][1000 genomes]
rs34300091	0.86[ASN][1000 genomes]
rs34534264	0.99[ASN][1000 genomes]
rs34603970	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34969108	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35006769	0.82[EUR][1000 genomes]
rs35569214	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35751119	0.95[ASN][1000 genomes]
rs3978728	0.97[ASN][1000 genomes]
rs6786110	0.84[ASN][1000 genomes]
rs7616735	0.88[ASN][1000 genomes]
rs7619802	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7645977	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177648200-177655000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:177649200-177657000	Weak transcription	Esophagus	oesophagus
3	chr3:177649800-177654200	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:177650200-177653400	Enhancers	Fetal Lung	lung
5	chr3:177651200-177653200	Enhancers	Fetal Kidney	kidney
6	chr3:177651200-177653400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:177651200-177653400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr3:177651200-177654800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:177651800-177653200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:177651800-177653200	Enhancers	Adipose Nuclei	Adipose
11	chr3:177651800-177653200	Enhancers	Fetal Heart	heart
12	chr3:177651800-177653200	Enhancers	Fetal Muscle Leg	muscle
13	chr3:177651800-177653200	Enhancers	Placenta	Placenta
14	chr3:177651800-177653400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:177651800-177653600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr3:177651800-177653600	Enhancers	HepG2	liver
17	chr3:177652000-177653200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:177652000-177653200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:177652000-177653200	Enhancers	Left Ventricle	heart
20	chr3:177652000-177653200	Enhancers	Psoas Muscle	Psoas
21	chr3:177652000-177653200	Enhancers	Right Atrium	heart
22	chr3:177652000-177653400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr3:177652200-177653200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:177652200-177653200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr3:177652400-177653800	Enhancers	A549	lung
26	chr3:177653000-177653200	Enhancers	Spleen	Spleen
27	chr3:177653000-177653600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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