Variant report

Variant	rs1582399
Chromosome Location	chr3:177635954-177635955
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12489750	0.87[ASN][1000 genomes]
rs12492069	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12492409	0.87[ASN][1000 genomes]
rs12496207	0.83[ASN][1000 genomes]
rs12497387	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13062823	0.87[ASN][1000 genomes]
rs13074448	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13075342	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1362828	0.80[ASN][1000 genomes]
rs1421163	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1421164	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421169	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16828811	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16828819	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1861886	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1895074	0.80[ASN][1000 genomes]
rs1895075	0.83[ASN][1000 genomes]
rs34534264	0.87[ASN][1000 genomes]
rs34603970	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34969108	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35006769	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35494413	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35569214	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35751119	0.86[ASN][1000 genomes]
rs3978728	0.87[ASN][1000 genomes]
rs6779965	0.80[ASN][1000 genomes]
rs7616735	0.90[ASN][1000 genomes]
rs7619802	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177635600-177636800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:177635800-177636000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:177635800-177636200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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