Variant report

Variant	rs35006769
Chromosome Location	chr3:177635783-177635784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12492069	0.82[EUR][1000 genomes]
rs1421163	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1421164	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1421169	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1582399	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1861886	0.82[EUR][1000 genomes]
rs34969108	0.81[EUR][1000 genomes]
rs35494413	0.82[EUR][1000 genomes]
rs35569214	0.81[EUR][1000 genomes]
rs7616735	0.81[ASN][1000 genomes]
rs7619802	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177635000-177635800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:177635200-177635800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:177635600-177636800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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