Variant report

Variant	rs7616735
Chromosome Location	chr3:177639504-177639505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11919677	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs11920776	0.87[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs12489750	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12492069	0.87[ASN][1000 genomes]
rs12492409	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12496207	0.85[ASN][1000 genomes]
rs12497387	0.86[ASN][1000 genomes]
rs13062823	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13075342	0.85[ASN][1000 genomes]
rs1362828	0.82[ASN][1000 genomes]
rs1421163	0.95[ASN][1000 genomes]
rs1421164	0.94[ASN][1000 genomes]
rs1421169	0.89[ASN][1000 genomes]
rs1421170	0.81[EUR][1000 genomes]
rs1582399	0.90[ASN][1000 genomes]
rs16828811	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs16828819	0.86[ASN][1000 genomes]
rs1861886	0.87[ASN][1000 genomes]
rs1895074	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1895075	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34300091	0.81[EUR][1000 genomes]
rs34534264	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34969108	0.88[ASN][1000 genomes]
rs35006769	0.81[ASN][1000 genomes]
rs35494413	0.88[ASN][1000 genomes]
rs35569214	0.88[ASN][1000 genomes]
rs35751119	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3978728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6779965	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6786110	0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs7619802	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7648771	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177638000-177649800	Weak transcription	Primary hematopoietic stem cells	blood

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