Variant report

Variant	rs7648771
Chromosome Location	chr3:177637145-177637146
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1075544	0.82[ASN][1000 genomes]
rs10936960	0.82[ASN][1000 genomes]
rs11919677	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11920776	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11922170	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12489750	0.81[EUR][1000 genomes]
rs12492409	0.81[EUR][1000 genomes]
rs12496207	0.96[ASN][1000 genomes]
rs13062823	0.81[EUR][1000 genomes]
rs13066104	0.82[ASN][1000 genomes]
rs13087011	0.81[ASN][1000 genomes]
rs13314585	0.81[ASN][1000 genomes]
rs1362828	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1421157	0.82[ASN][1000 genomes]
rs1421158	0.82[ASN][1000 genomes]
rs1421161	0.82[ASN][1000 genomes]
rs1421162	0.82[ASN][1000 genomes]
rs1421163	0.83[ASN][1000 genomes]
rs1421164	0.82[ASN][1000 genomes]
rs1421170	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1421173	0.82[ASN][1000 genomes]
rs1895068	0.82[ASN][1000 genomes]
rs1895074	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1895075	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34300091	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34534264	0.81[EUR][1000 genomes]
rs35751119	0.82[EUR][1000 genomes]
rs3978728	0.80[EUR][1000 genomes]
rs57315928	0.82[ASN][1000 genomes]
rs6769109	0.82[ASN][1000 genomes]
rs6779965	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6786110	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6804905	0.82[ASN][1000 genomes]
rs737553	0.82[ASN][1000 genomes]
rs737555	0.81[ASN][1000 genomes]
rs7616735	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7645977	0.80[ASN][1000 genomes]
rs9838142	0.82[ASN][1000 genomes]
rs9862300	0.82[ASN][1000 genomes]
rs9875424	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links