Variant report

Variant	rs1421163
Chromosome Location	chr3:177636693-177636694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11919677	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11920776	0.91[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs12489750	0.92[ASN][1000 genomes]
rs12492069	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12492409	0.86[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12496207	0.87[ASN][1000 genomes]
rs12497387	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13062823	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs13074448	0.88[EUR][1000 genomes]
rs13075342	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1362828	0.84[ASN][1000 genomes]
rs1421164	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1421169	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1421170	0.82[ASN][1000 genomes]
rs1582399	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16828811	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16828819	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1861886	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1895074	0.84[ASN][1000 genomes]
rs1895075	0.87[ASN][1000 genomes]
rs34300091	0.82[ASN][1000 genomes]
rs34534264	0.92[ASN][1000 genomes]
rs34603970	0.88[EUR][1000 genomes]
rs34969108	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35006769	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35494413	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35569214	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35751119	0.89[ASN][1000 genomes]
rs3978728	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6779965	0.84[ASN][1000 genomes]
rs6786110	0.91[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs7616735	0.95[ASN][1000 genomes]
rs7619802	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7648771	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1421163	ATP11B	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177635600-177636800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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