Variant report

Variant	rs12496207
Chromosome Location	chr3:177638543-177638544
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1075544	0.86[ASN][1000 genomes]
rs10936960	0.86[ASN][1000 genomes]
rs11919677	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11920776	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs11922170	0.87[ASN][1000 genomes]
rs12489750	0.81[ASN][1000 genomes]
rs12492409	0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs13062823	0.91[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs13066104	0.86[ASN][1000 genomes]
rs13087011	0.85[ASN][1000 genomes]
rs13314585	0.85[ASN][1000 genomes]
rs1362828	0.96[ASN][1000 genomes]
rs1362829	0.82[ASN][1000 genomes]
rs1421157	0.86[ASN][1000 genomes]
rs1421158	0.86[ASN][1000 genomes]
rs1421160	0.83[ASN][1000 genomes]
rs1421161	0.86[ASN][1000 genomes]
rs1421162	0.86[ASN][1000 genomes]
rs1421163	0.87[ASN][1000 genomes]
rs1421164	0.86[ASN][1000 genomes]
rs1421166	0.82[ASN][1000 genomes]
rs1421167	0.82[ASN][1000 genomes]
rs1421169	0.81[ASN][1000 genomes]
rs1421170	0.94[ASN][1000 genomes]
rs1421173	0.86[ASN][1000 genomes]
rs1582399	0.83[ASN][1000 genomes]
rs16828811	0.85[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs1895068	0.86[ASN][1000 genomes]
rs1895074	0.96[ASN][1000 genomes]
rs1895075	1.00[ASN][1000 genomes]
rs34300091	0.94[ASN][1000 genomes]
rs34534264	0.81[ASN][1000 genomes]
rs34969108	0.80[ASN][1000 genomes]
rs35494413	0.80[ASN][1000 genomes]
rs35569214	0.80[ASN][1000 genomes]
rs3978728	0.83[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs57315928	0.86[ASN][1000 genomes]
rs6769109	0.86[ASN][1000 genomes]
rs6775970	0.82[ASN][1000 genomes]
rs6779965	0.96[ASN][1000 genomes]
rs6783796	0.82[ASN][1000 genomes]
rs6786110	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs6804905	0.86[ASN][1000 genomes]
rs6807952	0.82[ASN][1000 genomes]
rs6808901	0.83[ASN][1000 genomes]
rs737553	0.86[ASN][1000 genomes]
rs737555	0.85[ASN][1000 genomes]
rs7616735	0.85[ASN][1000 genomes]
rs7619802	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap]
rs7645977	0.84[ASN][1000 genomes]
rs7648771	0.96[ASN][1000 genomes]
rs9830203	0.82[ASN][1000 genomes]
rs9838142	0.86[ASN][1000 genomes]
rs9862300	0.86[ASN][1000 genomes]
rs9875424	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177637800-177638800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:177638000-177649800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links