Variant report

Variant	rs11922170
Chromosome Location	chr3:177667289-177667290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1075544	0.97[ASN][1000 genomes]
rs10936960	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11919677	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11920776	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12489750	0.81[ASN][1000 genomes]
rs12492069	0.81[ASN][1000 genomes]
rs12492409	0.81[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12495203	0.82[ASN][1000 genomes]
rs12496207	0.87[ASN][1000 genomes]
rs12497387	0.82[ASN][1000 genomes]
rs13062823	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs13066104	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13075342	0.83[ASN][1000 genomes]
rs13087011	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13314585	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1362828	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1362829	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1421157	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1421158	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1421160	0.94[ASN][1000 genomes]
rs1421161	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1421162	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1421166	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1421167	0.93[ASN][1000 genomes]
rs1421170	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1421173	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16828811	0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs16828819	0.84[ASN][1000 genomes]
rs1861886	0.81[ASN][1000 genomes]
rs1895068	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1895072	0.86[ASN][1000 genomes]
rs1895073	0.85[ASN][1000 genomes]
rs1895074	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1895075	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2160836	0.86[ASN][1000 genomes]
rs34300091	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34534264	0.81[ASN][1000 genomes]
rs34969108	0.80[ASN][1000 genomes]
rs35494413	0.80[ASN][1000 genomes]
rs35569214	0.80[ASN][1000 genomes]
rs35751119	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3961634	0.86[ASN][1000 genomes]
rs3978728	0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs57315928	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6769109	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6775970	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6776256	0.84[ASN][1000 genomes]
rs6779965	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6783796	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6786110	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6804905	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6807952	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6808901	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs737553	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs737555	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7619802	0.91[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7645977	0.96[ASN][1000 genomes]
rs7648771	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9830203	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9838142	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9862300	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9875424	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997975	chr3:177664921-177719623	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3517383	chr3:177666966-177667303	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177666400-177667400	Enhancers	Fetal Muscle Leg	muscle
2	chr3:177666400-177667400	Enhancers	HSMMtube	muscle
3	chr3:177666400-177667600	Enhancers	Fetal Thymus	thymus
4	chr3:177666400-177668000	Enhancers	Dnd41	blood
5	chr3:177666600-177668400	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:177666800-177667600	Enhancers	Thymus	Thymus
7	chr3:177666800-177668000	Enhancers	Primary B cells from cord blood	blood

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