Variant report

Variant	rs6776432
Chromosome Location	chr3:100212911-100212912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100212615..100215029-chr3:100245878..100248398,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11707581	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11708520	0.91[AFR][1000 genomes]
rs11920506	0.81[AFR][1000 genomes]
rs56225992	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135413	0.86[AFR][1000 genomes]
rs73150397	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73152103	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73152160	0.86[AFR][1000 genomes]
rs7618791	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6776432	TMEM45A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100211000-100214000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:100211800-100213600	Weak transcription	Spleen	Spleen
3	chr3:100211800-100213800	Weak transcription	Lung	lung
4	chr3:100212000-100213200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:100212000-100215400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:100212000-100215800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:100212200-100215600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:100212400-100213000	Enhancers	Fetal Muscle Trunk	muscle
9	chr3:100212400-100213000	Weak transcription	GM12878-XiMat	blood
10	chr3:100212400-100213200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:100212400-100213200	Enhancers	Fetal Stomach	stomach
12	chr3:100212400-100214000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:100212400-100214400	Weak transcription	NHDF-Ad	bronchial
14	chr3:100212400-100214800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:100212400-100214800	Weak transcription	NHEK	skin
16	chr3:100212400-100215200	Weak transcription	HSMMtube	muscle
17	chr3:100212400-100215200	Weak transcription	NH-A	brain
18	chr3:100212400-100215200	Weak transcription	NHLF	lung
19	chr3:100212400-100215400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:100212400-100215600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:100212400-100219200	Weak transcription	Aorta	Aorta
22	chr3:100212400-100222800	Weak transcription	Ovary	ovary
23	chr3:100212600-100213000	Enhancers	Fetal Lung	lung
24	chr3:100212600-100213600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:100212600-100213600	Weak transcription	Brain Anterior Caudate	brain
26	chr3:100212600-100214800	Weak transcription	HMEC	breast
27	chr3:100212600-100215200	Weak transcription	Osteobl	bone
28	chr3:100212600-100215400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:100212800-100213000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:100212800-100213000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr3:100212800-100213200	Active TSS	Liver	Liver
32	chr3:100212800-100213600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:100212800-100213600	Weak transcription	HepG2	liver
34	chr3:100212800-100214400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr3:100212800-100214800	Weak transcription	HSMM	muscle
36	chr3:100212800-100215200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:100212800-100217800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:100212800-100224800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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