Variant report

Variant	rs6777791
Chromosome Location	chr3:100004670-100004671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100004605..100006310-chr3:100013598..100015816,2	MCF-7	breast:
2	chr3:100001262..100005277-chr3:100005969..100008923,3	K562	blood:
3	chr3:99904186..99906809-chr3:100003420..100005148,2	K562	blood:

Variant related genes	Relation type
ENSG00000235156	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6794575	0.91[AFR][1000 genomes]
rs6810151	0.91[AFR][1000 genomes]
rs7618395	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv869690	chr3:99984442-100054949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99980600-100037200	Weak transcription	Spleen	Spleen
2	chr3:99980600-100053200	Weak transcription	Gastric	stomach
3	chr3:99981200-100004800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:99981200-100030800	Weak transcription	Fetal Heart	heart
5	chr3:99982400-100005400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:99983200-100010000	Weak transcription	Pancreas	Pancrea
7	chr3:99984200-100010000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:99984200-100011000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:99986600-100024800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr3:99988800-100013800	Weak transcription	Fetal Brain Male	brain
11	chr3:99989000-100005800	Weak transcription	Thymus	Thymus
12	chr3:99989000-100007600	Weak transcription	HUVEC	blood vessel
13	chr3:99989000-100025000	Weak transcription	Fetal Brain Female	brain
14	chr3:99990400-100005000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:99990400-100006000	Weak transcription	HSMMtube	muscle
16	chr3:99990600-100010600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:99990600-100030600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:99990800-100021400	Weak transcription	Psoas Muscle	Psoas
19	chr3:99991000-100006000	Weak transcription	Right Ventricle	heart
20	chr3:99992400-100017600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:99994200-100014200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr3:99994400-100007800	Weak transcription	Aorta	Aorta
23	chr3:99994400-100040800	Weak transcription	Esophagus	oesophagus
24	chr3:99995400-100019000	Weak transcription	Colonic Mucosa	Colon
25	chr3:99995800-100006000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:99996000-100012400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:99996000-100052800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:99996000-100053000	Weak transcription	Small Intestine	intestine
29	chr3:99996400-100025600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:99996800-100004800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr3:99996800-100010400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr3:99996800-100016800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:99997000-100008400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr3:99997000-100008800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr3:99997200-100011000	Weak transcription	Brain Substantia Nigra	brain
36	chr3:99997200-100017800	Weak transcription	Brain Angular Gyrus	brain
37	chr3:99997600-100017000	Weak transcription	Brain Hippocampus Middle	brain
38	chr3:99997800-100007000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr3:99997800-100031800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr3:99998000-100011800	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr3:99998000-100013600	Weak transcription	Fetal Kidney	kidney
42	chr3:99998200-100005200	Strong transcription	HepG2	liver
43	chr3:99998200-100009600	Strong transcription	Primary T cells from cord blood	blood
44	chr3:99998200-100013400	Weak transcription	Colon Smooth Muscle	Colon
45	chr3:99998200-100016200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:99998400-100006400	Strong transcription	NHDF-Ad	bronchial
47	chr3:99998400-100007000	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr3:99998400-100007200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:99998400-100007400	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr3:99998400-100028000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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