Variant report

Variant	rs6794575
Chromosome Location	chr3:100009098-100009099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100006968..100009716-chr3:100021611..100023503,2	K562	blood:
2	chr3:99990146..99991860-chr3:100006662..100009109,2	K562	blood:
3	chr3:100006753..100009290-chr3:100024867..100027126,2	K562	blood:
4	chr3:100002355..100004216-chr3:100007322..100009320,2	MCF-7	breast:
5	chr3:100006936..100011076-chr3:100013450..100017169,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16842059	0.88[LWK][hapmap]
rs17584271	1.00[ASW][hapmap]
rs6777791	0.91[AFR][1000 genomes]
rs6805834	1.00[ASW][hapmap]
rs6809618	0.85[AFR][1000 genomes]
rs6810151	0.84[AFR][1000 genomes]
rs7618395	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv869690	chr3:99984442-100054949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99980600-100037200	Weak transcription	Spleen	Spleen
2	chr3:99980600-100053200	Weak transcription	Gastric	stomach
3	chr3:99981200-100030800	Weak transcription	Fetal Heart	heart
4	chr3:99983200-100010000	Weak transcription	Pancreas	Pancrea
5	chr3:99984200-100010000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:99984200-100011000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:99986600-100024800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:99988800-100013800	Weak transcription	Fetal Brain Male	brain
9	chr3:99989000-100025000	Weak transcription	Fetal Brain Female	brain
10	chr3:99990600-100010600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:99990600-100030600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:99990800-100021400	Weak transcription	Psoas Muscle	Psoas
13	chr3:99992400-100017600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:99994200-100014200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:99994400-100040800	Weak transcription	Esophagus	oesophagus
16	chr3:99995400-100019000	Weak transcription	Colonic Mucosa	Colon
17	chr3:99996000-100012400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:99996000-100052800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:99996000-100053000	Weak transcription	Small Intestine	intestine
20	chr3:99996400-100025600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:99996800-100010400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:99996800-100016800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr3:99997200-100011000	Weak transcription	Brain Substantia Nigra	brain
24	chr3:99997200-100017800	Weak transcription	Brain Angular Gyrus	brain
25	chr3:99997600-100017000	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:99997800-100031800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr3:99998000-100011800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:99998000-100013600	Weak transcription	Fetal Kidney	kidney
29	chr3:99998200-100009600	Strong transcription	Primary T cells from cord blood	blood
30	chr3:99998200-100013400	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:99998200-100016200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:99998400-100028000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:99998600-100015400	Strong transcription	Osteobl	bone
34	chr3:99998600-100026400	Strong transcription	HSMM	muscle
35	chr3:99998600-100033800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:99998800-100012000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:99998800-100019800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr3:99998800-100021800	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr3:99998800-100026600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:99999000-100012600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr3:99999200-100012800	Strong transcription	Placenta	Placenta
42	chr3:99999800-100012600	Strong transcription	Fetal Muscle Trunk	muscle
43	chr3:100000400-100012600	Strong transcription	Fetal Thymus	thymus
44	chr3:100000800-100015800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:100001000-100014200	Weak transcription	Stomach Mucosa	stomach
46	chr3:100001600-100014000	Weak transcription	GM12878-XiMat	blood
47	chr3:100001800-100009200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:100001800-100014200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr3:100002000-100009800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr3:100002200-100013600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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