Variant report

Variant	rs6780163
Chromosome Location	chr3:46071550-46071551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11130080	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12485978	0.91[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.86[TSI][hapmap]
rs12630101	0.95[JPT][hapmap]
rs12635657	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12639598	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13060901	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs13073861	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1392290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs1491959	0.88[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap]
rs1546077	0.88[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap]
rs1994490	0.95[JPT][hapmap]
rs2131091	0.86[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap]
rs2373154	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs3733100	0.95[JPT][hapmap]
rs3796375	0.95[JPT][hapmap]
rs3821884	0.95[JPT][hapmap]
rs3851347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs4490402	0.82[JPT][hapmap]
rs4682810	0.88[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap]
rs6764042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs6784214	0.88[CEU][hapmap]
rs6795629	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6809381	0.88[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap]
rs730983	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs737452	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs751552	0.95[JPT][hapmap]
rs751553	0.95[JPT][hapmap]
rs7623460	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.80[YRI][hapmap]
rs7623476	0.80[CHD][hapmap];0.81[JPT][hapmap]
rs7643426	0.85[CHB][hapmap]
rs9824886	0.90[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46070600-46076400	Weak transcription	Right Atrium	heart
2	chr3:46070800-46072200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46070800-46072400	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:46070800-46072400	Enhancers	GM12878-XiMat	blood
5	chr3:46071000-46072400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:46071400-46072400	Enhancers	Primary B cells from cord blood	blood

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