Variant report

Variant	rs3851347
Chromosome Location	chr3:46053778-46053779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46034481..46038695-chr3:46049566..46055289,5	K562	blood:
2	chr3:46048434..46050837-chr3:46053075..46054735,2	K562	blood:

Variant related genes	Relation type
ENSG00000163820	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11130080	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11130085	0.82[ASN][1000 genomes]
rs11130086	0.81[ASN][1000 genomes]
rs11917890	0.82[ASN][1000 genomes]
rs11929281	0.82[ASN][1000 genomes]
rs12485978	0.91[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs12495073	0.96[ASN][1000 genomes]
rs12496322	0.82[ASN][1000 genomes]
rs12629632	0.81[EUR][1000 genomes]
rs12630101	0.95[JPT][hapmap]
rs12635657	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12637023	0.83[ASN][1000 genomes]
rs12639598	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs13059919	0.89[ASN][1000 genomes]
rs13060901	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13065737	0.82[EUR][1000 genomes]
rs13073861	0.87[CHB][hapmap]
rs13077099	0.82[ASN][1000 genomes]
rs13098271	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13434336	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1392290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1491959	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1500005	0.91[ASN][1000 genomes]
rs1546077	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1602579	0.82[EUR][1000 genomes]
rs1604069	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17078495	0.84[ASN][1000 genomes]
rs17078577	0.83[ASN][1000 genomes]
rs1909595	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1909596	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1976367	0.83[EUR][1000 genomes]
rs1994490	0.95[JPT][hapmap]
rs2036292	0.89[ASN][1000 genomes]
rs2131091	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2201984	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2373154	0.86[CHB][hapmap]
rs28808964	0.92[ASN][1000 genomes]
rs34381514	0.91[ASN][1000 genomes]
rs34906043	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35359253	0.82[EUR][1000 genomes]
rs35435608	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35462017	0.81[EUR][1000 genomes]
rs35537559	0.84[ASN][1000 genomes]
rs35657218	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35688834	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3733097	0.80[ASN][1000 genomes]
rs3733100	0.95[JPT][hapmap]
rs3796375	0.95[JPT][hapmap]
rs3821884	0.95[JPT][hapmap]
rs4234452	0.92[ASN][1000 genomes]
rs4314213	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4333119	0.91[ASN][1000 genomes]
rs4490402	0.82[JPT][hapmap]
rs4682800	0.81[JPT][hapmap]
rs4682810	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4683168	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4683175	0.83[ASN][1000 genomes]
rs4683178	0.82[ASN][1000 genomes]
rs59226168	0.84[ASN][1000 genomes]
rs59521415	0.82[EUR][1000 genomes]
rs60539039	0.94[ASN][1000 genomes]
rs62242796	0.84[ASN][1000 genomes]
rs67044455	0.84[ASN][1000 genomes]
rs6764042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6778896	0.84[ASN][1000 genomes]
rs6780163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs6784214	0.89[CEU][hapmap]
rs6794103	0.82[ASN][1000 genomes]
rs6795629	0.88[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs6800484	0.80[ASN][1000 genomes]
rs6805094	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6809381	0.89[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs730983	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs737452	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs751552	0.95[JPT][hapmap]
rs751553	0.95[JPT][hapmap]
rs7609756	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7610518	0.81[EUR][1000 genomes]
rs7616464	0.91[ASN][1000 genomes]
rs7623190	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7623460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7623476	0.81[JPT][hapmap]
rs7631598	0.89[ASN][1000 genomes]
rs7642701	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7643426	0.85[CHB][hapmap]
rs9311386	0.83[ASN][1000 genomes]
rs9311387	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs931704	0.84[ASN][1000 genomes]
rs9637425	0.84[ASN][1000 genomes]
rs9824886	0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs9849015	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9863204	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9870445	0.83[ASN][1000 genomes]
rs9876587	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9990063	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3430613	chr3:46053340-46053932	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46037600-46064600	Weak transcription	Gastric	stomach
2	chr3:46052600-46054000	Enhancers	Ovary	ovary

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