Variant report

Variant	rs28808964
Chromosome Location	chr3:46045182-46045183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46038061..46039576-chr3:46044215..46045732,2	K562	blood:
2	chr3:46044700..46047149-chr3:46047918..46051696,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11130080	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11130085	0.80[ASN][1000 genomes]
rs11917890	0.80[ASN][1000 genomes]
rs11929281	0.80[ASN][1000 genomes]
rs12495073	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12496322	0.80[ASN][1000 genomes]
rs12635494	0.81[ASN][1000 genomes]
rs12635657	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12637023	0.81[ASN][1000 genomes]
rs12639598	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13059919	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13060901	0.91[ASN][1000 genomes]
rs13077099	0.80[ASN][1000 genomes]
rs13098271	0.88[ASN][1000 genomes]
rs1392290	0.91[ASN][1000 genomes]
rs1500005	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17078495	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17078577	0.81[ASN][1000 genomes]
rs1994490	0.81[ASN][1000 genomes]
rs2036292	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2201984	0.88[ASN][1000 genomes]
rs34381514	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34906043	0.88[ASN][1000 genomes]
rs35435608	0.88[ASN][1000 genomes]
rs35537559	0.87[ASN][1000 genomes]
rs35657218	0.88[ASN][1000 genomes]
rs35688834	0.82[ASN][1000 genomes]
rs3733097	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3733100	0.81[ASN][1000 genomes]
rs3796375	0.86[AMR][1000 genomes]
rs3821884	0.80[ASN][1000 genomes]
rs3851347	0.92[ASN][1000 genomes]
rs4234452	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4314213	0.83[ASN][1000 genomes]
rs4333119	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4683168	0.88[ASN][1000 genomes]
rs4683175	0.81[ASN][1000 genomes]
rs4683178	0.80[ASN][1000 genomes]
rs59226168	0.87[ASN][1000 genomes]
rs60539039	0.98[ASN][1000 genomes]
rs62242796	0.87[ASN][1000 genomes]
rs67044455	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6764042	0.91[ASN][1000 genomes]
rs6778896	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6794103	0.80[ASN][1000 genomes]
rs6805094	0.91[ASN][1000 genomes]
rs730983	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs737452	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs751552	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs751553	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7609756	0.82[ASN][1000 genomes]
rs7616464	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7623190	0.87[ASN][1000 genomes]
rs7623460	0.91[ASN][1000 genomes]
rs7631598	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7642701	0.88[ASN][1000 genomes]
rs931704	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9637425	0.82[ASN][1000 genomes]
rs9849015	0.89[ASN][1000 genomes]
rs9863204	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46037600-46053000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:46037600-46064600	Weak transcription	Gastric	stomach
3	chr3:46038200-46047400	Weak transcription	Psoas Muscle	Psoas
4	chr3:46043200-46047600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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