Variant report

Variant	rs9637425
Chromosome Location	chr3:46114025-46114026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1072755	0.81[CEU][hapmap]
rs11130080	0.82[CEU][hapmap]
rs11130085	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130086	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1118879	0.88[ASN][1000 genomes]
rs11917890	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11929281	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12485978	0.88[ASN][1000 genomes]
rs12495073	0.86[ASN][1000 genomes]
rs12496322	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12629632	0.88[ASN][1000 genomes]
rs12630101	0.81[CEU][hapmap]
rs12635657	0.88[CEU][hapmap]
rs12637023	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12639598	0.86[CEU][hapmap]
rs13059919	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13060901	0.84[ASN][1000 genomes]
rs13065737	0.88[ASN][1000 genomes]
rs13073861	0.91[CEU][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13077099	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13077923	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13078053	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13082280	0.85[ASN][1000 genomes]
rs13098271	0.81[ASN][1000 genomes]
rs13434029	0.85[ASN][1000 genomes]
rs13434336	0.93[ASN][1000 genomes]
rs1392290	0.84[ASN][1000 genomes]
rs1491959	0.93[ASN][1000 genomes]
rs1500005	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1546077	0.89[ASN][1000 genomes]
rs1546078	0.89[ASN][1000 genomes]
rs1552489	0.81[CEU][hapmap]
rs1602579	0.88[ASN][1000 genomes]
rs1604069	0.93[ASN][1000 genomes]
rs17078577	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1909595	0.91[ASN][1000 genomes]
rs1909596	0.93[ASN][1000 genomes]
rs1976366	0.89[ASN][1000 genomes]
rs1976367	0.89[ASN][1000 genomes]
rs2036292	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2054866	0.81[CEU][hapmap]
rs2131091	0.95[CEU][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2201984	0.81[ASN][1000 genomes]
rs2220678	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2248228	0.86[CEU][hapmap]
rs2373150	0.85[ASN][1000 genomes]
rs2373151	0.85[ASN][1000 genomes]
rs2373153	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2373154	0.86[CEU][hapmap];0.88[ASN][1000 genomes]
rs28808964	0.82[ASN][1000 genomes]
rs34067839	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34381514	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34906043	0.81[ASN][1000 genomes]
rs35359253	0.88[ASN][1000 genomes]
rs35435608	0.81[ASN][1000 genomes]
rs35462017	0.88[ASN][1000 genomes]
rs35567508	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35657218	0.81[ASN][1000 genomes]
rs36111470	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3774639	0.81[CEU][hapmap]
rs3796375	0.86[CEU][hapmap]
rs3851347	0.84[ASN][1000 genomes]
rs4234452	0.82[ASN][1000 genomes]
rs4318588	0.85[ASN][1000 genomes]
rs4333119	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4535265	0.81[CEU][hapmap]
rs4682806	0.91[ASN][1000 genomes]
rs4682809	0.89[ASN][1000 genomes]
rs4682810	0.89[ASN][1000 genomes]
rs4683168	0.81[ASN][1000 genomes]
rs4683175	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4683176	0.84[EUR][1000 genomes]
rs4683178	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56307311	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59521415	0.88[ASN][1000 genomes]
rs60539039	0.84[ASN][1000 genomes]
rs61079448	0.88[ASN][1000 genomes]
rs6441944	0.88[ASN][1000 genomes]
rs6764042	0.84[ASN][1000 genomes]
rs6772051	0.85[ASN][1000 genomes]
rs6776028	0.84[ASN][1000 genomes]
rs6784214	0.89[ASN][1000 genomes]
rs6794103	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6794475	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6795629	0.89[ASN][1000 genomes]
rs6800484	0.92[ASN][1000 genomes]
rs6805094	0.84[ASN][1000 genomes]
rs6808074	0.85[ASN][1000 genomes]
rs6809381	0.88[ASN][1000 genomes]
rs730983	0.82[CEU][hapmap]
rs737452	0.86[CEU][hapmap]
rs751552	0.86[CEU][hapmap]
rs751553	0.86[CEU][hapmap]
rs7610518	0.88[ASN][1000 genomes]
rs7616464	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7623460	0.84[ASN][1000 genomes]
rs7631598	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7642701	0.81[ASN][1000 genomes]
rs9311386	0.93[ASN][1000 genomes]
rs9311387	0.93[ASN][1000 genomes]
rs9824886	0.88[ASN][1000 genomes]
rs9849015	0.82[ASN][1000 genomes]
rs9870445	0.93[ASN][1000 genomes]
rs9876587	0.93[ASN][1000 genomes]
rs9990063	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46103800-46114200	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr3:46107600-46114200	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr3:46113200-46120000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr3:46113600-46120000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:46114000-46114200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:46114000-46114800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:46114000-46117800	Weak transcription	Dnd41	blood

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