Variant report

Variant	rs13434336
Chromosome Location	chr3:46119791-46119792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:45978760..45981889-chr3:46119716..46121321,25	MCF-7	breast:
2	chr3:45979945..45981160-chr3:46119722..46121315,21	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs11130080	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs11130085	0.93[ASN][1000 genomes]
rs11130086	0.92[ASN][1000 genomes]
rs1118879	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11917890	0.93[ASN][1000 genomes]
rs11929281	0.93[ASN][1000 genomes]
rs12485978	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12496322	0.93[ASN][1000 genomes]
rs12629632	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12630101	0.82[JPT][hapmap]
rs12635657	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs12637023	0.93[ASN][1000 genomes]
rs12639598	0.82[JPT][hapmap]
rs13059919	0.83[ASN][1000 genomes]
rs13060901	0.96[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13065737	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13073861	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs13077099	0.93[ASN][1000 genomes]
rs13077923	0.88[ASN][1000 genomes]
rs13078053	0.90[ASN][1000 genomes]
rs13082280	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13098271	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13434029	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1392290	0.96[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1491959	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1491960	0.88[ASW][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap];0.84[LWK][hapmap];0.84[MEX][hapmap];0.96[AFR][1000 genomes]
rs1500005	0.84[ASN][1000 genomes]
rs1546077	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1546078	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1602579	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1604069	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17078577	0.93[ASN][1000 genomes]
rs1909595	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1909596	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1976366	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1976367	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1994490	0.82[JPT][hapmap]
rs2036292	0.83[ASN][1000 genomes]
rs2131091	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2201984	0.86[ASN][1000 genomes]
rs2220678	0.88[ASN][1000 genomes]
rs2373150	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2373151	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2373153	0.86[ASN][1000 genomes]
rs2373154	0.95[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs34067839	0.88[ASN][1000 genomes]
rs34381514	0.84[ASN][1000 genomes]
rs34906043	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35359253	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35435608	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35462017	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35567508	0.90[ASN][1000 genomes]
rs35657218	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36111470	0.88[ASN][1000 genomes]
rs3733100	0.82[JPT][hapmap]
rs3796375	0.82[JPT][hapmap]
rs3821884	0.82[JPT][hapmap]
rs3851347	0.96[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4314213	0.82[ASN][1000 genomes]
rs4318588	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4333119	0.84[ASN][1000 genomes]
rs4682806	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4682809	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682810	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683168	0.86[ASN][1000 genomes]
rs4683175	0.93[ASN][1000 genomes]
rs4683178	0.93[ASN][1000 genomes]
rs56307311	0.88[ASN][1000 genomes]
rs59521415	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61079448	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6441944	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6764042	0.96[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6776028	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6780163	0.96[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap]
rs6784214	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6794103	0.93[ASN][1000 genomes]
rs6794475	0.86[ASN][1000 genomes]
rs6795629	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6800484	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6805094	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6809381	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs730983	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs737452	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs751552	0.82[JPT][hapmap]
rs751553	0.82[JPT][hapmap]
rs7610518	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7616464	0.84[ASN][1000 genomes]
rs7623190	0.86[EUR][1000 genomes]
rs7623460	0.96[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7631598	0.86[ASN][1000 genomes]
rs7642701	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9311386	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9311387	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9637425	0.93[ASN][1000 genomes]
rs9824886	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9849015	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9870445	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9876587	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9990063	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13434336	ANO10	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46113200-46120000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr3:46113600-46120000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:46114200-46120000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr3:46115000-46120000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr3:46118400-46119800	Weak transcription	Dnd41	blood
6	chr3:46118600-46120000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:46118600-46120200	Weak transcription	GM12878-XiMat	blood

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