Variant report

Variant	rs56307311
Chromosome Location	chr3:46162719-46162720
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46149777..46152755-chr3:46160739..46163366,2	MCF-7	breast:
2	chr3:46162316..46164554-chr3:46164815..46166918,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11130085	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130086	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1118879	0.93[ASN][1000 genomes]
rs11917890	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11929281	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12485978	0.93[ASN][1000 genomes]
rs12495073	0.80[ASN][1000 genomes]
rs12496322	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12629632	0.93[ASN][1000 genomes]
rs12637023	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13059919	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13065737	0.93[ASN][1000 genomes]
rs13073861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13077099	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13077923	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13082280	0.91[ASN][1000 genomes]
rs13434029	0.91[ASN][1000 genomes]
rs13434336	0.88[ASN][1000 genomes]
rs1491959	0.88[ASN][1000 genomes]
rs1500005	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1546077	0.92[ASN][1000 genomes]
rs1546078	0.92[ASN][1000 genomes]
rs1546079	0.84[AFR][1000 genomes]
rs1602579	0.93[ASN][1000 genomes]
rs1604069	0.88[ASN][1000 genomes]
rs17078577	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1909595	0.85[ASN][1000 genomes]
rs1909596	0.88[ASN][1000 genomes]
rs1976366	0.92[ASN][1000 genomes]
rs1976367	0.92[ASN][1000 genomes]
rs2036292	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2131091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2373150	0.91[ASN][1000 genomes]
rs2373151	0.91[ASN][1000 genomes]
rs2373153	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2373154	0.93[ASN][1000 genomes]
rs34067839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34381514	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35359253	0.93[ASN][1000 genomes]
rs35462017	0.93[ASN][1000 genomes]
rs35567508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36111470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4318588	0.91[ASN][1000 genomes]
rs4333119	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4682806	0.90[ASN][1000 genomes]
rs4682809	0.92[ASN][1000 genomes]
rs4682810	0.92[ASN][1000 genomes]
rs4683175	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683176	0.80[EUR][1000 genomes]
rs4683178	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59521415	0.93[ASN][1000 genomes]
rs61079448	0.93[ASN][1000 genomes]
rs6441944	0.93[ASN][1000 genomes]
rs6772051	0.82[ASN][1000 genomes]
rs6776028	0.90[ASN][1000 genomes]
rs6784214	0.92[ASN][1000 genomes]
rs6794103	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6794475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6795629	0.92[ASN][1000 genomes]
rs6800484	0.89[ASN][1000 genomes]
rs6808074	0.82[ASN][1000 genomes]
rs6809381	0.93[ASN][1000 genomes]
rs7610518	0.93[ASN][1000 genomes]
rs7616464	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7631598	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9311386	0.88[ASN][1000 genomes]
rs9311387	0.88[ASN][1000 genomes]
rs9637425	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9824886	0.83[ASN][1000 genomes]
rs9870445	0.88[ASN][1000 genomes]
rs9876587	0.88[ASN][1000 genomes]
rs9990063	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46146800-46164400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:46152600-46165200	Weak transcription	Spleen	Spleen
3	chr3:46156800-46168000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:46157200-46166600	Weak transcription	Psoas Muscle	Psoas
5	chr3:46157200-46168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:46158000-46163200	Weak transcription	Fetal Stomach	stomach
7	chr3:46158200-46162800	Weak transcription	Fetal Lung	lung
8	chr3:46159600-46165000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:46159600-46165000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:46159600-46165000	Weak transcription	Adipose Nuclei	Adipose
11	chr3:46159800-46164400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:46159800-46165000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:46160200-46165000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr3:46161400-46169400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:46161600-46163600	Enhancers	Placenta	Placenta
16	chr3:46161800-46165000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:46162400-46162800	Enhancers	NHDF-Ad	bronchial
18	chr3:46162400-46163000	Enhancers	NHEK	skin
19	chr3:46162400-46163600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:46162400-46164400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:46162600-46162800	Enhancers	Small Intestine	intestine
22	chr3:46162600-46162800	Enhancers	HMEC	breast
23	chr3:46162600-46162800	Enhancers	NHLF	lung
24	chr3:46162600-46163200	Enhancers	Hela-S3	cervix

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