Variant report

Variant	rs6776028
Chromosome Location	chr3:46168694-46168695
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46167391..46169192-chr3:46171465..46173672,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11130080	0.82[JPT][hapmap]
rs11130085	0.85[ASN][1000 genomes]
rs11130086	0.86[ASN][1000 genomes]
rs1118879	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11917890	0.85[ASN][1000 genomes]
rs11929281	0.85[ASN][1000 genomes]
rs12485978	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12496322	0.85[ASN][1000 genomes]
rs12629632	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12630101	0.81[JPT][hapmap]
rs12635657	0.81[CHB][hapmap]
rs12637023	0.85[ASN][1000 genomes]
rs12639598	0.81[JPT][hapmap]
rs13060901	0.92[CEU][hapmap];0.81[JPT][hapmap]
rs13065737	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13073861	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs13077099	0.85[ASN][1000 genomes]
rs13077923	0.90[ASN][1000 genomes]
rs13078053	0.88[ASN][1000 genomes]
rs13082280	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13434029	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13434336	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1392290	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs1491959	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1491960	0.81[JPT][hapmap]
rs1546077	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1546078	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1602579	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1604069	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17078577	0.85[ASN][1000 genomes]
rs1909595	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1909596	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1976366	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1976367	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1994490	0.81[JPT][hapmap]
rs2131091	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2201984	0.87[EUR][1000 genomes]
rs2220678	0.87[ASN][1000 genomes]
rs2373150	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2373151	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2373153	0.92[ASN][1000 genomes]
rs2373154	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs34067839	0.90[ASN][1000 genomes]
rs35359253	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35462017	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35567508	0.88[ASN][1000 genomes]
rs36111470	0.90[ASN][1000 genomes]
rs3733100	0.82[JPT][hapmap]
rs3796375	0.81[JPT][hapmap]
rs3821884	0.81[JPT][hapmap]
rs3851347	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs4314213	0.84[EUR][1000 genomes]
rs4318588	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682806	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4682809	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682810	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4683168	0.87[EUR][1000 genomes]
rs4683175	0.85[ASN][1000 genomes]
rs4683178	0.85[ASN][1000 genomes]
rs56307311	0.90[ASN][1000 genomes]
rs59521415	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61079448	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6441944	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6764042	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs6780163	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs6784214	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6794103	0.85[ASN][1000 genomes]
rs6794475	0.87[ASN][1000 genomes]
rs6795629	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6800484	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6809381	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs730983	0.81[JPT][hapmap]
rs737452	0.81[JPT][hapmap]
rs751552	0.81[JPT][hapmap]
rs751553	0.81[JPT][hapmap]
rs7610518	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7623460	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs9311386	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9311387	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9637425	0.84[ASN][1000 genomes]
rs9824886	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9870445	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9876587	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9990063	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46161400-46169400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:46162800-46168800	Weak transcription	HMEC	breast
3	chr3:46164000-46171000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:46165400-46170800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:46165800-46169000	Weak transcription	Dnd41	blood
6	chr3:46166000-46170800	Weak transcription	Spleen	Spleen
7	chr3:46166200-46171200	Weak transcription	Primary B cells from cord blood	blood
8	chr3:46166400-46169000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:46166400-46170600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:46166600-46172600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:46166800-46168800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:46166800-46168800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:46166800-46171400	Weak transcription	Placenta	Placenta
14	chr3:46167000-46168800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:46167000-46169400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:46167000-46171000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:46167000-46171800	Weak transcription	Adipose Nuclei	Adipose
18	chr3:46167000-46175600	Weak transcription	Fetal Lung	lung
19	chr3:46167800-46169000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:46167800-46170000	Enhancers	NHLF	lung
21	chr3:46168000-46169800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:46168400-46169800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:46168600-46169200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:46168600-46169400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:46168600-46169400	Enhancers	Hela-S3	cervix
26	chr3:46168600-46169600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:46168600-46169800	Enhancers	NHEK	skin
28	chr3:46168600-46170000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:46168600-46170000	Enhancers	NHDF-Ad	bronchial

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