The 2.0 version of rSNPBase

Variant report

Variant rs1546078
Chromosome Location chr3:46150136-46150137
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:46129400-46154200 Enhancers Primary Natural Killer cells fromperipheralblood blood
2 chr3:46131400-46152200 Weak transcription Pancreas Pancrea
3 chr3:46139200-46150600 Weak transcription Lung lung
4 chr3:46141000-46150200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr3:46143200-46150600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr3:46143800-46153000 Enhancers Fetal Thymus thymus
7 chr3:46144800-46150600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr3:46145200-46152400 Enhancers Dnd41 blood
9 chr3:46146200-46150200 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr3:46146400-46150400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr3:46146400-46150600 Weak transcription Placenta Amnion Placenta Amnion
12 chr3:46146600-46150200 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr3:46146800-46164400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr3:46147200-46150600 Weak transcription Primary T cells from cord blood blood
15 chr3:46147400-46150400 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr3:46147400-46150400 Weak transcription Primary B cells from peripheral blood blood
17 chr3:46147400-46150400 Weak transcription Spleen Spleen
18 chr3:46147400-46150800 Weak transcription Esophagus oesophagus
19 chr3:46147600-46151400 Enhancers Thymus Thymus
20 chr3:46148200-46152800 Enhancers Primary T killer memory cells from peripheral blood blood
21 chr3:46148400-46160200 Enhancers Primary monocytes fromperipheralblood blood
22 chr3:46148600-46152800 Enhancers Primary T cells fromperipheralblood blood
23 chr3:46148800-46151400 Enhancers Primary T helper cells fromperipheralblood blood
24 chr3:46148800-46152800 Enhancers Primary T helper naive cells from peripheral blood blood
25 chr3:46149000-46150600 Enhancers Primary neutrophils fromperipheralblood blood
26 chr3:46149000-46151200 Enhancers Small Intestine intestine
27 chr3:46149000-46151600 Enhancers Primary T killer naive cells fromperipheralblood blood
28 chr3:46149000-46152000 Enhancers GM12878-XiMat blood
29 chr3:46149000-46152000 Enhancers Monocytes-CD14+_RO01746 blood
30 chr3:46149200-46151400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr3:46149200-46158800 Enhancers NHLF lung
32 chr3:46149200-46159800 Enhancers Placenta Placenta
33 chr3:46149400-46150400 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr3:46149400-46150600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr3:46149400-46151400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr3:46149400-46152800 Enhancers HSMM muscle
37 chr3:46149600-46150800 Enhancers HSMMtube muscle
38 chr3:46149600-46151400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
39 chr3:46149600-46151400 Enhancers Primary T helper 17 cells PMA-I stimulated --
40 chr3:46149600-46152600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
41 chr3:46149800-46150200 Weak transcription Primary B cells from cord blood blood
42 chr3:46149800-46150200 Enhancers Fetal Stomach stomach
43 chr3:46149800-46151000 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
44 chr3:46150000-46151000 Enhancers Brain Germinal Matrix brain
45 chr3:46150000-46151200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
46 chr3:46150000-46151200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr3:46150000-46151200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr3:46150000-46151200 Enhancers Duodenum Mucosa Duodenum
49 chr3:46150000-46151200 Enhancers Skeletal Muscle Female skeletal muscle
50 chr3:46150000-46151600 Enhancers Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015