Variant report

Variant	rs4333119
Chromosome Location	chr3:46096501-46096502
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46095387..46098200-chr3:46100479..46102760,2	K562	blood:

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs11130080	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11130085	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130086	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11917890	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11929281	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12485978	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs12495073	0.89[CEU][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12496322	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12630101	1.00[JPT][hapmap]
rs12635657	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12637023	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12639598	0.84[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13059919	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13060901	0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs13066048	0.81[CEU][hapmap]
rs13073861	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13077099	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13077923	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13078053	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13098271	0.88[ASN][1000 genomes]
rs13434336	0.84[ASN][1000 genomes]
rs1392290	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1491959	0.81[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1500005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546077	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1546078	0.81[ASN][1000 genomes]
rs1546079	1.00[YRI][hapmap]
rs1604069	0.85[ASN][1000 genomes]
rs17078495	0.80[ASN][1000 genomes]
rs17078577	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1909595	0.82[ASN][1000 genomes]
rs1909596	0.85[ASN][1000 genomes]
rs1976366	0.81[ASN][1000 genomes]
rs1976367	0.81[ASN][1000 genomes]
rs1994490	1.00[JPT][hapmap]
rs2036292	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2131091	0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2201984	0.88[ASN][1000 genomes]
rs2220678	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2248228	0.88[CEU][hapmap]
rs2373153	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2373154	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs28808964	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34067839	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34381514	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34906043	0.88[ASN][1000 genomes]
rs35435608	0.88[ASN][1000 genomes]
rs35537559	0.80[ASN][1000 genomes]
rs35567508	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35657218	0.88[ASN][1000 genomes]
rs35688834	0.82[ASN][1000 genomes]
rs36111470	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3733100	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3774634	0.81[CEU][hapmap]
rs3796375	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs3821884	1.00[JPT][hapmap]
rs3851347	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4234452	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4314213	0.83[ASN][1000 genomes]
rs4682800	0.85[JPT][hapmap]
rs4682806	0.83[ASN][1000 genomes]
rs4682809	0.81[ASN][1000 genomes]
rs4682810	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs4683157	0.81[CEU][hapmap]
rs4683168	0.88[ASN][1000 genomes]
rs4683175	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4683178	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56307311	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59226168	0.80[ASN][1000 genomes]
rs60539039	0.91[ASN][1000 genomes]
rs62242796	0.80[ASN][1000 genomes]
rs67044455	0.80[ASN][1000 genomes]
rs6764042	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6778896	0.80[ASN][1000 genomes]
rs6780163	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs6784214	0.81[ASN][1000 genomes]
rs6794103	0.90[ASN][1000 genomes]
rs6794475	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6795629	0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs6800484	0.84[ASN][1000 genomes]
rs6805094	0.91[ASN][1000 genomes]
rs6809381	0.86[CHB][hapmap]
rs730983	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs737452	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs751552	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs751553	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs7609756	0.82[ASN][1000 genomes]
rs7616464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623190	0.87[ASN][1000 genomes]
rs7623460	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7631598	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7642701	0.88[ASN][1000 genomes]
rs7643426	0.85[CHB][hapmap]
rs9311386	0.85[ASN][1000 genomes]
rs9311387	0.85[ASN][1000 genomes]
rs931704	0.80[ASN][1000 genomes]
rs936938	0.81[CEU][hapmap]
rs9637425	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9824886	0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs9849015	0.88[ASN][1000 genomes]
rs9870445	0.85[ASN][1000 genomes]
rs9876587	0.85[ASN][1000 genomes]
rs9990063	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46095400-46096600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:46096000-46099200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:46096400-46099000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr3:46096400-46106200	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links