Variant report

Variant	rs12637023
Chromosome Location	chr3:46121192-46121193
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:45978760..45981889-chr3:46119716..46121321,25	MCF-7	breast:
2	chr3:46103249..46106082-chr3:46119956..46121890,2	K562	blood:
3	chr3:45979945..45981160-chr3:46119722..46121315,21	K562	blood:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1072755	0.82[CEU][hapmap]
rs11130080	0.88[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs11130085	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130086	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1118879	0.88[ASN][1000 genomes]
rs11917890	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11929281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12485978	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12495073	0.83[CEU][hapmap];0.85[ASN][1000 genomes]
rs12496322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12629632	0.88[ASN][1000 genomes]
rs12630101	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs12635657	0.84[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs12639598	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs13059919	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13060901	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs13065737	0.88[ASN][1000 genomes]
rs13066048	0.83[CEU][hapmap]
rs13073861	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13077099	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13077923	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13078053	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13082280	0.86[ASN][1000 genomes]
rs13098271	0.81[ASN][1000 genomes]
rs13434029	0.86[ASN][1000 genomes]
rs13434336	0.93[ASN][1000 genomes]
rs1392290	0.83[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs1491959	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1500005	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1546077	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1546078	0.90[ASN][1000 genomes]
rs1546079	0.84[JPT][hapmap];1.00[YRI][hapmap]
rs1552489	0.82[CEU][hapmap]
rs1602579	0.88[ASN][1000 genomes]
rs1604069	0.93[ASN][1000 genomes]
rs17078577	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909595	0.90[ASN][1000 genomes]
rs1909596	0.93[ASN][1000 genomes]
rs1976366	0.90[ASN][1000 genomes]
rs1976367	0.90[ASN][1000 genomes]
rs1994490	0.90[JPT][hapmap]
rs2036292	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2054866	0.82[CEU][hapmap]
rs2131091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2201984	0.81[ASN][1000 genomes]
rs2220678	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2248228	0.91[CEU][hapmap]
rs2373150	0.86[ASN][1000 genomes]
rs2373151	0.86[ASN][1000 genomes]
rs2373153	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2373154	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs28808964	0.81[ASN][1000 genomes]
rs34067839	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34381514	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34906043	0.81[ASN][1000 genomes]
rs35359253	0.88[ASN][1000 genomes]
rs35435608	0.81[ASN][1000 genomes]
rs35462017	0.88[ASN][1000 genomes]
rs35567508	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35657218	0.81[ASN][1000 genomes]
rs36111470	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3733100	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs3774634	0.83[CEU][hapmap]
rs3774639	0.82[CEU][hapmap]
rs3796375	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs3821884	0.90[JPT][hapmap]
rs3851347	0.84[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs4234452	0.81[ASN][1000 genomes]
rs4318588	0.86[ASN][1000 genomes]
rs4333119	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4535265	0.82[CEU][hapmap]
rs4682806	0.92[ASN][1000 genomes]
rs4682809	0.90[ASN][1000 genomes]
rs4682810	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4683157	0.83[CEU][hapmap]
rs4683168	0.81[ASN][1000 genomes]
rs4683175	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683176	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4683178	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56307311	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59521415	0.88[ASN][1000 genomes]
rs60539039	0.83[ASN][1000 genomes]
rs61079448	0.88[ASN][1000 genomes]
rs6441944	0.88[ASN][1000 genomes]
rs6764042	0.83[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs6772051	0.86[ASN][1000 genomes]
rs6776028	0.85[ASN][1000 genomes]
rs6780163	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs6784214	0.90[ASN][1000 genomes]
rs6794103	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6794475	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6795629	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6800484	0.93[ASN][1000 genomes]
rs6805094	0.83[ASN][1000 genomes]
rs6808074	0.86[ASN][1000 genomes]
rs6809381	0.94[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs730983	0.88[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs737452	0.87[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs751552	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs751553	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs7610518	0.88[ASN][1000 genomes]
rs7616464	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7623460	0.82[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs7631598	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7642701	0.81[ASN][1000 genomes]
rs9311386	0.93[ASN][1000 genomes]
rs9311387	0.93[ASN][1000 genomes]
rs936938	0.83[CEU][hapmap]
rs9637425	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9824886	0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs9849015	0.81[ASN][1000 genomes]
rs9870445	0.93[ASN][1000 genomes]
rs9876587	0.93[ASN][1000 genomes]
rs9990063	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46120000-46121400	Enhancers	Fetal Thymus	thymus
2	chr3:46120000-46122400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:46120000-46122400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:46120000-46124000	Enhancers	Fetal Lung	lung
5	chr3:46120200-46122400	Enhancers	NHLF	lung
6	chr3:46120200-46122600	Enhancers	Colon Smooth Muscle	Colon
7	chr3:46120400-46121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:46120400-46121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:46120400-46121600	Weak transcription	HMEC	breast
10	chr3:46120400-46121800	Weak transcription	Ovary	ovary
11	chr3:46120400-46121800	Weak transcription	NHEK	skin
12	chr3:46120400-46122000	Weak transcription	Osteobl	bone
13	chr3:46120400-46122200	Weak transcription	Adipose Nuclei	Adipose
14	chr3:46120400-46123000	Enhancers	NHDF-Ad	bronchial
15	chr3:46120600-46121200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr3:46120600-46122000	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:46120600-46122400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:46120600-46122600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:46120600-46127200	Weak transcription	Fetal Stomach	stomach
20	chr3:46120800-46121800	Weak transcription	Hela-S3	cervix
21	chr3:46120800-46122200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:46120800-46122200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:46120800-46122600	Weak transcription	Placenta	Placenta
24	chr3:46120800-46127000	Weak transcription	HSMMtube	muscle
25	chr3:46120800-46129400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr3:46121000-46122800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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