Variant report

Variant	rs4683178
Chromosome Location	chr3:46130097-46130098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46129568..46133226-chr3:46150928..46153874,4	MCF-7	breast:
2	chr3:46129217..46131683-chr3:46137784..46140762,2	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs11130085	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130086	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1118879	0.89[ASN][1000 genomes]
rs11917890	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929281	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12485978	0.89[ASN][1000 genomes]
rs12495073	0.84[ASN][1000 genomes]
rs12496322	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629632	0.89[ASN][1000 genomes]
rs12637023	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13059919	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13060901	0.83[ASN][1000 genomes]
rs13065737	0.89[ASN][1000 genomes]
rs13073861	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13077099	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077923	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13078053	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13082280	0.87[ASN][1000 genomes]
rs13098271	0.81[ASN][1000 genomes]
rs13434029	0.87[ASN][1000 genomes]
rs13434336	0.93[ASN][1000 genomes]
rs1392290	0.82[ASN][1000 genomes]
rs1491959	0.93[ASN][1000 genomes]
rs1500005	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1546077	0.90[ASN][1000 genomes]
rs1546078	0.90[ASN][1000 genomes]
rs1602579	0.89[ASN][1000 genomes]
rs1604069	0.92[ASN][1000 genomes]
rs17078577	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1909595	0.89[ASN][1000 genomes]
rs1909596	0.92[ASN][1000 genomes]
rs1976366	0.90[ASN][1000 genomes]
rs1976367	0.90[ASN][1000 genomes]
rs2036292	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2131091	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2201984	0.81[ASN][1000 genomes]
rs2220678	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2373150	0.87[ASN][1000 genomes]
rs2373151	0.87[ASN][1000 genomes]
rs2373153	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2373154	0.89[ASN][1000 genomes]
rs28808964	0.80[ASN][1000 genomes]
rs34067839	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34381514	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34906043	0.81[ASN][1000 genomes]
rs35359253	0.89[ASN][1000 genomes]
rs35435608	0.81[ASN][1000 genomes]
rs35462017	0.89[ASN][1000 genomes]
rs35567508	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35657218	0.81[ASN][1000 genomes]
rs36111470	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3851347	0.82[ASN][1000 genomes]
rs4234452	0.80[ASN][1000 genomes]
rs4318588	0.87[ASN][1000 genomes]
rs4333119	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4682806	0.93[ASN][1000 genomes]
rs4682809	0.90[ASN][1000 genomes]
rs4682810	0.90[ASN][1000 genomes]
rs4683168	0.81[ASN][1000 genomes]
rs4683175	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4683176	0.83[EUR][1000 genomes]
rs56307311	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59521415	0.89[ASN][1000 genomes]
rs60539039	0.82[ASN][1000 genomes]
rs61079448	0.89[ASN][1000 genomes]
rs6441944	0.89[ASN][1000 genomes]
rs6764042	0.83[ASN][1000 genomes]
rs6772051	0.86[ASN][1000 genomes]
rs6776028	0.85[ASN][1000 genomes]
rs6784214	0.90[ASN][1000 genomes]
rs6794103	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794475	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6795629	0.90[ASN][1000 genomes]
rs6800484	0.93[ASN][1000 genomes]
rs6805094	0.83[ASN][1000 genomes]
rs6808074	0.86[ASN][1000 genomes]
rs6809381	0.89[ASN][1000 genomes]
rs7610518	0.89[ASN][1000 genomes]
rs7616464	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7623460	0.83[ASN][1000 genomes]
rs7631598	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7642701	0.81[ASN][1000 genomes]
rs9311386	0.92[ASN][1000 genomes]
rs9311387	0.92[ASN][1000 genomes]
rs9637425	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9824886	0.87[ASN][1000 genomes]
rs9849015	0.81[ASN][1000 genomes]
rs9870445	0.92[ASN][1000 genomes]
rs9876587	0.92[ASN][1000 genomes]
rs9990063	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46123400-46130400	Weak transcription	Adipose Nuclei	Adipose
2	chr3:46125800-46130600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:46126200-46132600	Weak transcription	Right Atrium	heart
4	chr3:46127200-46138200	Weak transcription	Primary T cells from cord blood	blood
5	chr3:46127400-46130600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:46127600-46130200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:46127600-46130200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:46127600-46130400	Weak transcription	HMEC	breast
9	chr3:46127600-46130400	Weak transcription	NHDF-Ad	bronchial
10	chr3:46127600-46130600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:46127800-46130400	Weak transcription	NHEK	skin
12	chr3:46127800-46130600	Weak transcription	Placenta	Placenta
13	chr3:46128000-46130400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:46128200-46130200	Weak transcription	Spleen	Spleen
15	chr3:46128200-46130400	Weak transcription	Fetal Lung	lung
16	chr3:46128200-46130600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:46128200-46131000	Weak transcription	Esophagus	oesophagus
18	chr3:46128400-46130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:46128400-46130400	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:46128400-46130400	Weak transcription	HSMMtube	muscle
21	chr3:46128400-46130600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:46129200-46130200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr3:46129200-46132000	Weak transcription	Dnd41	blood
24	chr3:46129200-46147400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr3:46129400-46130400	Weak transcription	Hela-S3	cervix
26	chr3:46129400-46132000	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr3:46129400-46154200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:46129600-46130400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr3:46129800-46134000	Enhancers	Primary B cells from cord blood	blood
30	chr3:46129800-46134200	Enhancers	GM12878-XiMat	blood
31	chr3:46129800-46140000	Enhancers	Fetal Thymus	thymus

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