Variant report

Variant	rs2373151
Chromosome Location	chr3:46169631-46169632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46149539..46152315-chr3:46168852..46171063,2	K562	blood:
2	chr3:46169290..46171223-chr3:46177395..46178997,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11130085	0.87[ASN][1000 genomes]
rs11130086	0.88[ASN][1000 genomes]
rs1118879	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11917890	0.87[ASN][1000 genomes]
rs11929281	0.87[ASN][1000 genomes]
rs12485978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12496322	0.87[ASN][1000 genomes]
rs12629632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12637023	0.86[ASN][1000 genomes]
rs13060901	0.82[EUR][1000 genomes]
rs13065737	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13073861	0.90[ASN][1000 genomes]
rs13077099	0.87[ASN][1000 genomes]
rs13077923	0.91[ASN][1000 genomes]
rs13078053	0.90[ASN][1000 genomes]
rs13082280	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098271	0.86[EUR][1000 genomes]
rs13434029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13434336	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1392290	0.82[EUR][1000 genomes]
rs1491959	0.91[ASN][1000 genomes]
rs1546077	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1546078	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1602579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604069	0.90[ASN][1000 genomes]
rs17078577	0.86[ASN][1000 genomes]
rs1909595	0.87[ASN][1000 genomes]
rs1909596	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1976366	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1976367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2131091	0.91[ASN][1000 genomes]
rs2220678	0.88[ASN][1000 genomes]
rs2373150	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373153	0.93[ASN][1000 genomes]
rs2373154	0.86[ASN][1000 genomes]
rs34067839	0.91[ASN][1000 genomes]
rs34906043	0.86[EUR][1000 genomes]
rs35359253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35435608	0.87[EUR][1000 genomes]
rs35462017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35567508	0.90[ASN][1000 genomes]
rs35657218	0.87[EUR][1000 genomes]
rs36111470	0.91[ASN][1000 genomes]
rs4318588	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682806	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4682809	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682810	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4683175	0.86[ASN][1000 genomes]
rs4683178	0.87[ASN][1000 genomes]
rs56307311	0.91[ASN][1000 genomes]
rs59521415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61079448	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6441944	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6764042	0.82[EUR][1000 genomes]
rs6776028	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6784214	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6794103	0.87[ASN][1000 genomes]
rs6794475	0.89[ASN][1000 genomes]
rs6795629	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6800484	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6805094	0.82[EUR][1000 genomes]
rs6809381	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7610518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7623460	0.82[EUR][1000 genomes]
rs7642701	0.87[EUR][1000 genomes]
rs9311386	0.90[ASN][1000 genomes]
rs9311387	0.90[ASN][1000 genomes]
rs9637425	0.85[ASN][1000 genomes]
rs9824886	0.85[ASN][1000 genomes]
rs9849015	0.81[EUR][1000 genomes]
rs9870445	0.90[ASN][1000 genomes]
rs9876587	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9990063	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46164000-46171000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:46165400-46170800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:46166000-46170800	Weak transcription	Spleen	Spleen
4	chr3:46166200-46171200	Weak transcription	Primary B cells from cord blood	blood
5	chr3:46166400-46170600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:46166600-46172600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:46166800-46171400	Weak transcription	Placenta	Placenta
8	chr3:46167000-46171000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:46167000-46171800	Weak transcription	Adipose Nuclei	Adipose
10	chr3:46167000-46175600	Weak transcription	Fetal Lung	lung
11	chr3:46167800-46170000	Enhancers	NHLF	lung
12	chr3:46168000-46169800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:46168400-46169800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:46168600-46169800	Enhancers	NHEK	skin
15	chr3:46168600-46170000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:46168600-46170000	Enhancers	NHDF-Ad	bronchial
17	chr3:46168800-46169800	Enhancers	HMEC	breast
18	chr3:46168800-46170000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:46168800-46170000	Enhancers	HSMM	muscle
20	chr3:46168800-46171000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr3:46168800-46178200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr3:46169000-46172600	Enhancers	Dnd41	blood
23	chr3:46169200-46170000	Weak transcription	Fetal Thymus	thymus
24	chr3:46169400-46169800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:46169400-46169800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:46169400-46169800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:46169400-46170800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links